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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC539
Library CH
(Link to library)
Clone ID CHC539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12270-1
Original site URL
Representative seq. ID CHC539P
(Link to Original site)
Representative DNA sequence 
>CHC539 (CHC539Q) /CSM/CH/CHC5-B/CHC539Q.Seq.d/
ATATCAAACAAATAAAAATTAAACAAATATAAAAATGACAATTTTAGCTTCAATCTCATC
AATTGGTAATGTTAAATCAATTTCAAAATCAGATAATTTATCATCATTATCAAACTCGTC
ATCTTCTTTACAATCAATGAATTCAATTCAATGCGGTGGTTGTGGAAATGGAGGATTACT
CGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTCTTACTGGTACTGGTGTAATTGTTGGTTC
TGTTTTACATGGAGTTGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTA
AAATTACAAAAATTAAATTATAATTTATATATTAAACCACCAATAATATATTATTTATAA
ATGTAATAATATTGCCACAAATAAACATCTTATTTAAAAACTCTCAGTTTTTTCCAATTT
TTTTTTTCNAAAAAAAAAXXXXXXXXXXATATCAAACAAATAAAAATTAAACAAATATAA
AAATGACAATTTTAGCTTCAATCTCATCAATTGGTAATGTTAAATCAATTTCAAAATCAG
ATAATTTATCATCATTATCAAACTCGTCATCTTCTTTACAATCAATGAATTCAATTCAAT
GCGGTGGTTGTGGAAATGGAGGATTACTCGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTC
TTACTGGTACTGGTGTAATTGTTGGTTCTGTTTTACATGGAGTTGGTTCCATTTTAACTG
GAGGTTCAAACAATTGTGGTTGTAATTAAAATTACAAAAATTAAATTATAATTTATATAT
TAAACCNCCAATAATATATTATTTATAAATGTAATAATATTGCCACAAATNAACTNCTTA
TTTAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
ikqikikqi*k*qf*lqshqlvmlnqfqnqiiyhhyqtrhllynq*iqfnavvvemedys
vqsvvslvvfllvlv*llvlfymelvpf*levqtivvvikitkikl*fiy*TTNNILFIN
VIILPQINILFKNSQFFPIFFFXKK---

---IKQIKIKQI*k*qf*lqshqlvmlnqfqnqiiyhhyqtrhllynq*iqfnavvveme
dysvqsvvslvvfllvlv*llvlfymelvpf*levqtivvvikitkikl*fiy*txnnil
finviilpqxnxlfkn
Translated Amino Acid sequence (All Frames) 
Frame A:
isnk*klnkykndnfsfnlinw*c*infkir*fiiiiklvifftinefnsmrwlwkwrit
rcsrwsrwwcsywywcncwfcftwswfhfnwrfkqlwl*lklqklnynlyikppiiyyl*
m**ychk*tsylktlsffqfffskkk---

---isnk*klnkykndnfsfnlinw*c*infkir*fiiiiklvifftinefnsmrwlwkw
ritrcsrwsrwwcsywywcncwfcftwswfhfnwrfkqlwl*lklqklnynlyikppiiy
yl*m**ychkxtxylk

Frame B:
yqtnkn*tnikmtilasissignvksisksdnlsslsnsssslqsmnsiqcggcgnggll
gavgglvggvltgtgvivgsvlhgvgsiltggsnncgcn*nykn*iiiyilnhq*yiiyk
cnniatnkhli*klsvfsnfffxkk---

---yqtnkn*tnikmtilasissignvksisksdnlsslsnsssslqsmnsiqcggcgng
gllgavgglvggvltgtgvivgsvlhgvgsiltggsnncgcn*nykn*iiiyilnxq*yi
iykcnniatnxlli*k

Frame C:
ikqikikqi*k*qf*lqshqlvmlnqfqnqiiyhhyqtrhllynq*iqfnavvvemedys
vqsvvslvvfllvlv*llvlfymelvpf*levqtivvvikitkikl*fiy*TTNNILFIN
VIILPQINILFKNSQFFPIFFFXKK---

---IKQIKIKQI*k*qf*lqshqlvmlnqfqnqiiyhhyqtrhllynq*iqfnavvveme
dysvqsvvslvvfllvlv*llvlfymelvpf*levqtivvvikitkikl*fiy*txnnil
finviilpqxnxlfkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC539 (CHC539Q) /CSM/CH/CHC5-B/CHC539Q.Seq.d/                        545   e-154
SSJ278 (SSJ278Q) /CSM/SS/SSJ2-D/SSJ278Q.Seq.d/                        537   e-152
SSI350 (SSI350Q) /CSM/SS/SSI3-C/SSI350Q.Seq.d/                        537   e-152
SSH855 (SSH855Q) /CSM/SS/SSH8-C/SSH855Q.Seq.d/                        537   e-152
SSG665 (SSG665Q) /CSM/SS/SSG6-C/SSG665Q.Seq.d/                        527   e-149
SSH424 (SSH424Q) /CSM/SS/SSH4-A/SSH424Q.Seq.d/                        460   e-128
SSM358 (SSM358Q) /CSM/SS/SSM3-C/SSM358Q.Seq.d/                        454   e-126
SSF116 (SSF116Q) /CSM/SS/SSF1-A/SSF116Q.Seq.d/                        452   e-126
SSB359 (SSB359Q) /CSM/SS/SSB3-C/SSB359Q.Seq.d/                        452   e-126
CHP816 (CHP816Q) /CSM/CH/CHP8-A/CHP816Q.Seq.d/                        452   e-126
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   519   0.0    9
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   141   e-121  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   238   e-105  17
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    38   0.003  8
BX284929|BX284929.4 Human DNA sequence from clone RP11-681N21 on chromosome 1.    42   0.052  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    30   0.067  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.11   14
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    30   0.12   14
BX897681|BX897681.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-121M11.    48   0.23   1
AL929435|AL929435.16 Zebrafish DNA sequence from clone CH211-153J24 in linkage group 20.    48   0.23   1
dna update 2004. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7KWN3) RecName: Full=HssA/B-like protein 17;  &AC117076_7(AC11...    37   0.78
protein update 2008.10.24
PSORT 

 psg: 0.93  gvh: 0.34  alm: 0.30  top: 0.67  tms: 0.07  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHC539 is cyt
5' end seq. ID CHC539F
5' end seq. 
>CHC539F.Seq
ATATCAAACAAATAAAAATTAAACAAATATAAAAATGACAATTTTAGCTTCAATCTCATC
AATTGGTAATGTTAAATCAATTTCAAAATCAGATAATTTATCATCATTATCAAACTCGTC
ATCTTCTTTACAATCAATGAATTCAATTCAATGCGGTGGTTGTGGAAATGGAGGATTACT
CGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTCTTACTGGTACTGGTGTAATTGTTGGTTC
TGTTTTACATGGAGTTGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTA
AAATTACAAAAATTAAATTATAATTTATATATTAAACCACCAATAATATATTATTTATAA
ATGTAATAATATTGCCACAAATAAACATCTTATTTAAAAACTCTCAGTTTTTTCCAATTT
TTTTTTTCNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 448
3' end seq. ID CHC539Z
3' end seq. 
>CHC539Z.Seq
NNNNNNNNNNATATCAAACAAATAAAAATTAAACAAATATAAAAATGACAATTTTAGCTT
CAATCTCATCAATTGGTAATGTTAAATCAATTTCAAAATCAGATAATTTATCATCATTAT
CAAACTCGTCATCTTCTTTACAATCAATGAATTCAATTCAATGCGGTGGTTGTGGAAATG
GAGGATTACTCGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTCTTACTGGTACTGGTGTAA
TTGTTGGTTCTGTTTTACATGGAGTTGGTTCCATTTTAACTGGAGGTTCAAACAATTGTG
GTTGTAATTAAAATTACAAAAATTAAATTATAATTTATATATTAAACCNCCAATAATATA
TTATTTATAAATGTAATAATATTGCCACAAATNAACTNCTTATTTAAAAAC
Length of 3' end seq. 411
Connected seq. ID CHC539P
Connected seq. 
>CHC539P.Seq
ATATCAAACAAATAAAAATTAAACAAATATAAAAATGACAATTTTAGCTTCAATCTCATC
AATTGGTAATGTTAAATCAATTTCAAAATCAGATAATTTATCATCATTATCAAACTCGTC
ATCTTCTTTACAATCAATGAATTCAATTCAATGCGGTGGTTGTGGAAATGGAGGATTACT
CGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTCTTACTGGTACTGGTGTAATTGTTGGTTC
TGTTTTACATGGAGTTGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTA
AAATTACAAAAATTAAATTATAATTTATATATTAAACCACCAATAATATATTATTTATAA
ATGTAATAATATTGCCACAAATAAACATCTTATTTAAAAACTCTCAGTTTTTTCCAATTT
TTTTTTTCNAAAAAAAAA----------ATATCAAACAAATAAAAATTAAACAAATATAA
AAATGACAATTTTAGCTTCAATCTCATCAATTGGTAATGTTAAATCAATTTCAAAATCAG
ATAATTTATCATCATTATCAAACTCGTCATCTTCTTTACAATCAATGAATTCAATTCAAT
GCGGTGGTTGTGGAAATGGAGGATTACTCGGTGCAGTCGGTGGTCTCGTTGGTGGTGTTC
TTACTGGTACTGGTGTAATTGTTGGTTCTGTTTTACATGGAGTTGGTTCCATTTTAACTG
GAGGTTCAAACAATTGTGGTTGTAATTAAAATTACAAAAATTAAATTATAATTTATATAT
TAAACCNCCAATAATATATTATTTATAAATGTAATAATATTGCCACAAATNAACTNCTTA
TTTAAAAAC
Length of connected seq. 839
Full length Seq ID -
Full length Seq. -
Length of full length seq. -