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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC463
Library CH
(Link to library)
Clone ID CHC463
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC463 (CHC463Q) /CSM/CH/CHC4-C/CHC463Q.Seq.d/
XXXXXXXXXXAGAGGTAANCCAACCTGTATTAAAGCAAGACCACCGGTNCCACCACCACN
TTGCTCAACTTGNGCAGAGCTATCATCAGCATGTAATCACGTTGGNATGATNTGTATTCA
AGTAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---GXPTCIKARPPVPPPXCSTXAELSSACNHVGMXCIQV
Translated Amino Acid sequence (All Frames) 
Frame A:
---evxqpvlkqdhrxhhhxaqlxqsyhqhvitlx*xvfky


Frame B:
---r*xnly*skttgxtttllnlxraiism*srwxdxyss


Frame C:
---GXPTCIKARPPVPPPXCSTXAELSSACNHVGMXCIQV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC463 (CHC463Q) /CSM/CH/CHC4-C/CHC463Q.Seq.d/                        192   8e-49
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        184   2e-46
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        184   2e-46
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        184   2e-46
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        184   2e-46
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        184   2e-46
SSB232 (SSB232Q) /CSM/SS/SSB2-B/SSB232Q.Seq.d/                        184   2e-46
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/                        184   2e-46
SLG852 (SLG852Q) /CSM/SL/SLG8-C/SLG852Q.Seq.d/                        184   2e-46
SLG851 (SLG851Q) /CSM/SL/SLG8-C/SLG851Q.Seq.d/                        184   2e-46
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   184   2e-43  1
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.    76   1e-10  1
AC023107|AC023107.7 Homo sapiens BAC clone RP11-120K16 from 4, complete sequence.    40   6.1    1
dna update 2002.10.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        60   3e-08
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    60   3e-08
protein update 2008.12.31
PSORT 

 psg: 0.81  gvh: 0.47  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHC463 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC463Z
3' end seq. 
>CHC463Z.Seq
NNNNNNNNNNAGAGGTAANCCAACCTGTATTAAAGCAAGACCACCGGTNCCACCACCACN
TTGCTCAACTTGNGCAGAGCTATCATCAGCATGTAATCACGTTGGNATGATNTGTATTCA
AGTAC
Length of 3' end seq. 125
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -