CHC452
Library CH
(Link to library)
Clone ID CHC452
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHC452P
(Link to Original site)
Representative DNA sequence
>CHC452 (CHC452Q) /CSM/CH/CHC4-C/CHC452Q.Seq.d/
CACTGTTGGCCTACTGGAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATC
ACATTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAA
GAAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGT
CGTACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTA
AGAGGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTT
GAAGGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCA
CCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCT
GACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATG
CAAATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGAC
AACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTCCTCTNTCTGACTACAACATT
CAAAAANANTCCACTCTCCATTCNAGCTTTNAGATTAANAGGNGGNTTGCAAATTTTTGN
TCAAACCCTTCNCTGGTAAGACCNNCACCTTAAAGGTTGAANGTNGTGATAACNTTGNAA
ATGTCCAAANCCCAAATCCCACNNNAAAGAANGTTNCCCXXXXXXXXXXTTAAAACTTTN
CNNTGGTAAAACCATCCCCTTNAAGGTTNAAGGGTAGNNANAACCTTGAAAATGGNAAAG
NCAAAATNCAANGCAAAAGAAGGTNTCCCNCCAGATCAACAAAGNTTAATTTGGNTGGTA
ACCATTANAAAATGGTCGTACTCTNTNTGANTACAACATCCAAAAAGAATCCACTNTCCA
TTTAGTTTTAAGATTAAGAGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAAC
CATCACNTTGNAAGTNGAAGGTAGTGATAACCATTGAAAATGTCAAAGCCAAAATCCAAG
ACAAAGAAGGTATTCCACCAGATCAACAAAGTATTCATTTTCGCTGGTAAACAATTAGAA
GATGGCCGTACTCTCTCTGATTACAACATNCAAAAAGAATCCACTCTCCATTTAGTTCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACNTTGACTGGTAAGACCATCACATTG
GAAGTNGAAGGTNGTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGT
ATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATCTTTGTTAAAACTTTNACAGGTAAAACNATCACCTTGGAAGTCGAAGGT
AGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTNCTCTGATTA
CAACATTCAAAAGGAATCCNCTC
sequence update 2002.10.25
Translated Amino Acid sequence
llaywnyanfc*nshw*nhhigs*r**qh*kcqg*nsrqrrystrstkinlcw*tirrws
ysf*lqhskgihspfss*ikrwyanlcknshw*nhhlrg*r***h*kc*s*nsrqrrypt
rstkinfrw*tirrwsysl*lqhskgihsplgsqikrwyanlcknldw*nyhlgsrrf*q
h*kc*sqnprqrryptrstkinfrw*tirrwsssx*lqhskxxhspfxlxd*XXXCKFLX
KPFXGKTXTLKVEXXDNXXNVQXPNPTXKXVX---

---LKLXXGKTIPXKVXG*xxp*kwxxqnxxqkkvsxqinkx*fgw*plxngrtlxxyni
qkestxhlvlrlrggmqxfvktltgktitlxvegsdnh*kcqsqnprqrrystrstkysf
slvnn*kmavlslittxkknplsi*fsd*evvcksl*kx*lvrpshwkxkvvitlkmskp
kfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*evvcksllklxqvkx
spwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlxsdyniqkesx


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgimqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegip
pdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsd
nienvkakiqdkegippdqqrlifagkqledgrplsdyniqkxstlhssfxixrxxanfx
snpslvrpxp*rlxvvitlxmskxqipxxrxxp---

---LKLXXGKTIPXKVXG*xxp*kwxxqnxxqkkvsxqinkx*fgw*plxngrtlxxyni
qkestxhlvlrlrggmqxfvktltgktitlxvegsdnh*kcqsqnprqrrystrstkysf
slvnn*kmavlslittxkknplsi*fsd*evvcksl*kx*lvrpshwkxkvvitlkmskp
kfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*evvcksllklxqvkx
spwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlxsdyniqkesx

Frame B:
tvgllelckfllklslvkpshwklkvvttlkmsrlkfktkkvfhqinkd*sllvnn*kmv
vlflittfkrnplsi*fld*evvcksl*klslvkpsp*rlkvvitlkmlklkfktkkvsh
qinkd*fslvnn*kmvvlsltttfkrnplstwfsd*evvcksl*kp*lvklspwkskvlt
tlkmlkpksktkkvshqinkd*fslvnn*kmvvlxltttfkxxplsixaxrlxgglqifx
qtlxw*dxhlkg*xx**xxkcpxpkshxkexx---

---*nfxxvkpspxrxkgxxnlengkxkxqxkrrxpxrstkxnlxgnhxkmvvlxxxtts
kknplsi*f*d*evvckxllklslvkpsxxkxkvvitienvkakiqdkegippdqqsihf
rw*tirrwpysl*lqhxkrihspfssqikrwyanlcknxdw*dhhigsxrx**h*kcqsq
nsrqrrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfxr*nx
hlgsrr***h*kc*sqnprqrrystrsttshfrw*tirrwsysxlittfkrnpl

Frame C:
llaywnyanfc*nshw*nhhigs*r**qh*kcqg*nsrqrrystrstkinlcw*tirrws
ysf*lqhskgihspfss*ikrwyanlcknshw*nhhlrg*r***h*kc*s*nsrqrrypt
rstkinfrw*tirrwsysl*lqhskgihsplgsqikrwyanlcknldw*nyhlgsrrf*q
h*kc*sqnprqrryptrstkinfrw*tirrwsssx*lqhskxxhspfxlxd*XXXCKFLX
KPFXGKTXTLKVEXXDNXXNVQXPNPTXKXVX---

---ktxxw*nhplxgxrvxxtlkmxkxkxxakegxppdqqxliwxvtixkwsysx*xqhp
krihxpfsfkikrwyanxc*nshw*nhhxxsxr***plkmskpksktkkvfhqinkvfif
agkqledgrtlsdynxqkestlhlvlrlrggmqifvktltgktitlevegxdnienvkak
iqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktxtgkti
tlevegsdnienvkakiqdkegippdqqrlifagkqledgrtll*lqhskgix

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHC452 (CHC452Q) /CSM/CH/CHC4-C/CHC452Q.Seq.d/ 2989 0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/ 1302 0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/ 1298 0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/ 1298 0.0
CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/ 1292 0.0
CFD217 (CFD217Q) /CSM/CF/CFD2-A/CFD217Q.Seq.d/ 1289 0.0
VFI435 (VFI435Q) /CSM/VF/VFI4-B/VFI435Q.Seq.d/ 1279 0.0
AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/ 1279 0.0
SFI844 (SFI844Q) /CSM/SF/SFI8-B/SFI844Q.Seq.d/ 1277 0.0
AFO679 (AFO679Q) /CSM/AF/AFO6-D/AFO679Q.Seq.d/ 1271 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 1292 0.0 7
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 757 0.0 6
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 611 0.0 7
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 603 0.0 7
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 603 0.0 7
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 767 0.0 4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 767 0.0 4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 747 0.0 5
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 319 0.0 7
AB122067|AB122067.1 Crassostrea gigas mRNA for polyubiquitin, complete cds. 145 0.0 14
dna update 2004. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 413 0.0
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 414 0.0
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 410 0.0
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 410 0.0
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 410 0.0
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso... 410 0.0
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 410 0.0
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 410 0.0
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 410 0.0
AB009010_1(AB009010|pid:none) Homo sapiens mRNA for polyubiquiti... 410 0.0
protein update 2009. 3.30
PSORT

psg: 0.66 gvh: 0.45 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHC452 is nuc

5' end seq. ID CHC452F
5' end seq.
>CHC452F.Seq
CACTGTTGGCCTACTGGAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATC
ACATTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAA
GAAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGT
CGTACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTA
AGAGGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTT
GAAGGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCA
CCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCT
GACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATG
CAAATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGAC
AACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTCCTCTNTCTGACTACAACATT
CAAAAANANTCCACTCTCCATTCNAGCTTTNAGATTAANAGGNGGNTTGCAAATTTTTGN
TCAAACCCTTCNCTGGTAAGACCNNCACCTTAAAGGTTGAANGTNGTGATAACNTTGNAA
ATGTCCAAANCCCAAATCCCACNNNAAAGAANGTTNCCCNNNNNNNNNN
Length of 5' end seq. 829
3' end seq. ID CHC452Z
3' end seq.
>CHC452Z.Seq
NNNNNNNNNNTTAAAACTTTNCNNTGGTAAAACCATCCCCTTNAAGGTTNAAGGGTAGNN
ANAACCTTGAAAATGGNAAAGNCAAAATNCAANGCAAAAGAAGGTNTCCCNCCAGATCAA
CAAAGNTTAATTTGGNTGGTAACCATTANAAAATGGTCGTACTCTNTNTGANTACAACAT
CCAAAAAGAATCCACTNTCCATTTAGTTTTAAGATTAAGAGGTGGTATGCAAATNTTTGT
TAAAACTCTCACTGGTAAAACCATCACNTTGNAAGTNGAAGGTAGTGATAACCATTGAAA
ATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGTATTCATT
TTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATNCAAAAAGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACNTTG
ACTGGTAAGACCATCACATTGGAAGTNGAAGGTNGTGATAACATTGAAAATGTCAAAGCC
AAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAA
CAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCAT
TTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTNACAGGTAAAACN
ATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGAC
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTNCTCTGATTACAACATTCAAAAGGAATCCNCTC
Length of 3' end seq. 884
Connected seq. ID CHC452P
Connected seq.
>CHC452P.Seq
CACTGTTGGCCTACTGGAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATC
ACATTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAA
GAAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGT
CGTACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTA
AGAGGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTT
GAAGGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCA
CCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCT
GACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATG
CAAATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGAC
AACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTCCTCTNTCTGACTACAACATT
CAAAAANANTCCACTCTCCATTCNAGCTTTNAGATTAANAGGNGGNTTGCAAATTTTTGN
TCAAACCCTTCNCTGGTAAGACCNNCACCTTAAAGGTTGAANGTNGTGATAACNTTGNAA
ATGTCCAAANCCCAAATCCCACNNNAAAGAANGTTNCCC----------TTAAAACTTTN
CNNTGGTAAAACCATCCCCTTNAAGGTTNAAGGGTAGNNANAACCTTGAAAATGGNAAAG
NCAAAATNCAANGCAAAAGAAGGTNTCCCNCCAGATCAACAAAGNTTAATTTGGNTGGTA
ACCATTANAAAATGGTCGTACTCTNTNTGANTACAACATCCAAAAAGAATCCACTNTCCA
TTTAGTTTTAAGATTAAGAGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAAC
CATCACNTTGNAAGTNGAAGGTAGTGATAACCATTGAAAATGTCAAAGCCAAAATCCAAG
ACAAAGAAGGTATTCCACCAGATCAACAAAGTATTCATTTTCGCTGGTAAACAATTAGAA
GATGGCCGTACTCTCTCTGATTACAACATNCAAAAAGAATCCACTCTCCATTTAGTTCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACNTTGACTGGTAAGACCATCACATTG
GAAGTNGAAGGTNGTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGT
ATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATCTTTGTTAAAACTTTNACAGGTAAAACNATCACCTTGGAAGTCGAAGGT
AGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTNCTCTGATTA
CAACATTCAAAAGGAATCCNCTC
Length of connected seq. 1693
Full length Seq ID -
Full length Seq. -
Length of full length seq. -