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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC420
Library CH
(Link to library)
Clone ID CHC420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11598-1
Original site URL
Representative seq. ID CHC420P
(Link to Original site)
Representative DNA sequence 
>CHC420 (CHC420Q) /CSM/CH/CHC4-A/CHC420Q.Seq.d/
CTGTTGGCCTACTGGGTTTTCACCAAAAATTTTTAATTTTTTTTATTTTTATTTTTAGGA
ATCTTTCGTTTTTCTCATCAGATATAAAATAATTAATTAAATAATTAATTTAAAAAAAAA
AXXXXXXXXXXGCAGAAGATATTGNAATTTGTAAGAGTTNAATTGAANAAGGGCAATTTT
AAAGATGGATAGTGATGGTTAACNCCATNANNTATGGCAAAACAAAAAAAGAATAANCAA
TTGGAAGATTTAATGTCAAATTTAACATTGGATGCAGAATCATTTAAAAAAGCAAAAGAA
TCTGCACAAAAGAGTAAAGGTGGTAAATCTGGTGGAGCCGATGAAAGAGCATCACCAGAA
GCATTGAAAAACAATGGTAATAAAGCATTCTATAAACATGATTATGAAATTGCACTTCAT
TGGTATCAATTAGCAATCGATGTCGAAGATGTCTTAAATGAAAATGTACCAAAAGATCAA
TTAATCGCTCATACTCTCTATAGTAATAAATCAGCATGTC
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgfspkifnffyfyf*esfvflirykiin*IINLKKK---

---QKILXFVRVXLXKGNFKDG**wltpxxmakqkknxqledlmsnltldaesfkkakes
aqkskggksggaderaspealknngnkafykhdyeialhwyqlaidvedvlnenvpkdql
iahtlysnksac
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywvftknf*fflflflgifrfshqi*nn*lnn*fkkk---

---aedixicksxiexgqf*rwivmvnxxxygktkke*xigrfnvkfnigcrii*kskri
ctke*rw*iwwsr*ksitrsiekqw**sil*t*l*nctslvsisnrcrrclk*kctkrsi
nrsysl***ism

Frame B:
cwptgfspkifnffyfyf*esfvflirykiin*IINLKKK---

---QKILXFVRVXLXKGNFKDG**wltpxxmakqkknxqledlmsnltldaesfkkakes
aqkskggksggaderaspealknngnkafykhdyeialhwyqlaidvedvlnenvpkdql
iahtlysnksac

Frame C:
vgllgfhqkfliffififrnlsffssdik*lik*li*kk---

---rryxnl*exn*xrailkmdsdg*xhxxwqnkkrixnwki*cqi*hwmqnhlkkqknl
hkrvkvvnlvepmkehhqkh*ktmvikhsinmimklhfigin*qsmskms*mkmyqkin*
slilsivinqhv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC420 (CHC420Q) /CSM/CH/CHC4-A/CHC420Q.Seq.d/                        682   0.0
SFD804 (SFD804Q) /CSM/SF/SFD8-A/SFD804Q.Seq.d/                        654   0.0
CHD141 (CHD141Q) /CSM/CH/CHD1-B/CHD141Q.Seq.d/                        654   0.0
CHB814 (CHB814Q) /CSM/CH/CHB8-A/CHB814Q.Seq.d/                        654   0.0
CFI747 (CFI747Q) /CSM/CF/CFI7-B/CFI747Q.Seq.d/                        654   0.0
SFK679 (SFK679Q) /CSM/SF/SFK6-D/SFK679Q.Seq.d/                        648   0.0
CFH681 (CFH681Q) /CSM/CF/CFH6-D/CFH681Q.Seq.d/                        648   0.0
VFE246 (VFE246Q) /CSM/VF/VFE2-B/VFE246Q.Seq.d/                         90   4e-17
SHE413 (SHE413Q) /CSM/SH/SHE4-A/SHE413Q.Seq.d/                         48   1e-04
AHM715 (AHM715Q) /CSM/AH/AHM7-A/AHM715Q.Seq.d/                         48   1e-04
own update 2002.11.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CG708206|CG708206.1 1119007G04.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    48   1e-07  2
CG807137|CG807137.1 1118078B02.y1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    44   7e-07  2
CG730972|CG730972.1 1119131F09.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    44   1e-06  2
CG801640|CG801640.1 1118023C02.y1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    48   3e-06  2
CG731648|CG731648.1 1119142E09.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    48   3e-06  2
CG807211|CG807211.1 1118079B02.y1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    48   3e-06  2
CG807048|CG807048.1 1118077B01.y1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    48   3e-06  2
CG807289|CG807289.1 1118080C01.y1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    48   4e-06  2
CG726010|CG726010.1 1119088A07.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    42   5e-06  2
CG732260|CG732260.1 1119147A05.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    48   1e-05  2
dna update 2004. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU640366_573(CU640366|pid:none) Podospora anserina genomic DNA c...    40   0.043
BC082515_1(BC082515|pid:none) Xenopus tropicalis unc-45 homolog ...    38   0.16
AK095201_1(AK095201|pid:none) Homo sapiens cDNA FLJ37882 fis, cl...    37   0.21
(Q8WXU2) RecName: Full=Dyslexia susceptibility 1 candidate gene ...    37   0.21
(Q863A7) RecName: Full=Dyslexia susceptibility 1 candidate gene ...    37   0.21
AF337549_1(AF337549|pid:none) Homo sapiens EKN1 (EKN1) mRNA, com...    37   0.21
(Q863A4) RecName: Full=Dyslexia susceptibility 1 candidate gene ...    37   0.21
(Q863A6) RecName: Full=Dyslexia susceptibility 1 candidate gene ...    37   0.21
(Q863A5) RecName: Full=Dyslexia susceptibility 1 candidate gene ...    37   0.21
(P15705) RecName: Full=Heat shock protein STI1;  &A32567(A32567;...    37   0.28
protein update 2009. 3.29
PSORT 

 psg: 0.78  gvh: 0.39  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHC420 is nuc
5' end seq. ID CHC420F
5' end seq. 
>CHC420F.Seq
CTGTTGGCCTACTGGGTTTTCACCAAAAATTTTTAATTTTTTTTATTTTTATTTTTAGGA
ATCTTTCGTTTTTCTCATCAGATATAAAATAATTAATTAAATAATTAATTTAAAAAAAAA
ANNNNNNNNNN
Length of 5' end seq. 131
3' end seq. ID CHC420Z
3' end seq. 
>CHC420Z.Seq
NNNNNNNNNNGCAGAAGATATTGNAATTTGTAAGAGTTNAATTGAANAAGGGCAATTTTA
AAGATGGATAGTGATGGTTAACNCCATNANNTATGGCAAAACAAAAAAAGAATAANCAAT
TGGAAGATTTAATGTCAAATTTAACATTGGATGCAGAATCATTTAAAAAAGCAAAAGAAT
CTGCACAAAAGAGTAAAGGTGGTAAATCTGGTGGAGCCGATGAAAGAGCATCACCAGAAG
CATTGAAAAACAATGGTAATAAAGCATTCTATAAACATGATTATGAAATTGCACTTCATT
GGTATCAATTAGCAATCGATGTCGAAGATGTCTTAAATGAAAATGTACCAAAAGATCAAT
TAATCGCTCATACTCTCTATAGTAATAAATCAGCATGTC
Length of 3' end seq. 399
Connected seq. ID CHC420P
Connected seq. 
>CHC420P.Seq
CTGTTGGCCTACTGGGTTTTCACCAAAAATTTTTAATTTTTTTTATTTTTATTTTTAGGA
ATCTTTCGTTTTTCTCATCAGATATAAAATAATTAATTAAATAATTAATTTAAAAAAAAA
A----------GCAGAAGATATTGNAATTTGTAAGAGTTNAATTGAANAAGGGCAATTTT
AAAGATGGATAGTGATGGTTAACNCCATNANNTATGGCAAAACAAAAAAAGAATAANCAA
TTGGAAGATTTAATGTCAAATTTAACATTGGATGCAGAATCATTTAAAAAAGCAAAAGAA
TCTGCACAAAAGAGTAAAGGTGGTAAATCTGGTGGAGCCGATGAAAGAGCATCACCAGAA
GCATTGAAAAACAATGGTAATAAAGCATTCTATAAACATGATTATGAAATTGCACTTCAT
TGGTATCAATTAGCAATCGATGTCGAAGATGTCTTAAATGAAAATGTACCAAAAGATCAA
TTAATCGCTCATACTCTCTATAGTAATAAATCAGCATGTC
Length of connected seq. 510
Full length Seq ID -
Full length Seq. -
Length of full length seq. -