AFF426
Library AF
(Link to library)
Clone ID AFF426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AFF426Z
(Link to Original site)
Representative DNA sequence
>AFF426 (AFF426Q) /CSM/AF/AFF4-B/AFF426Q.Seq.d/
XXXXXXXXXXAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTA
AACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAA
TTAAATCAAGAAAAAAATTAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAAT
CATTCTTTCTTTTTAAAAAACT
sequence update 2001. 6. 2
Translated Amino Acid sequence
---AEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDE
YEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQ
QQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNN
KQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKN*qlleqeqnqk*fnh
sfflkn


Translated Amino Acid sequence (All Frames)
Frame A:
---g*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*
v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrt
ttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k*
*tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkltiirtrtkskii*s
fflfkk


Frame B:
---AEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDE
YEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQ
QQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNN
KQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKN*qlleqeqnqk*fnh
sfflkn


Frame C:
---lkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkisms
mklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdn
nkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkii
nkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnlii
lsf*kt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 656 0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 656 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 656 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 656 0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 656 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 656 0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/ 656 0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/ 656 0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/ 656 0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/ 656 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 656 0.0 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 1e-29 15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-11 20
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 1e-09 18
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 2e-08 12
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 9e-08 23
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 2e-07 14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 3e-07 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 6e-07 20
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 34 1e-06 15
dna update 2004. 4.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 259 8e-68
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 1.8
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 1.8
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 35 1.8
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 3.0
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 33 6.8
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I... 33 8.8
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 33 8.8
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote... 33 8.8
CP000487_662(CP000487|pid:none) Campylobacter fetus subsp. fetus... 33 8.8
protein update 2009. 4.20
PSORT

psg: 0.75 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for AFF426 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF426Z
3' end seq.
>AFF426Z.Seq
----------AGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTA
AACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAA
TTAAATCAAGAAAAAAATTAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAAT
CATTCTTTCTTTTTAAAAAACT
Length of 3' end seq. 732
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -