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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC267
Library CH
(Link to library)
Clone ID CHC267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16364-1
Original site URL
Representative seq. ID CHC267P
(Link to Original site)
Representative DNA sequence 
>CHC267 (CHC267Q) /CSM/CH/CHC2-C/CHC267Q.Seq.d/
ACTGTTGGCCTACTGGTAATAAAGTATGATGGTGAAAACAATCGAGATGGNGAAAATAAT
CAAGATGGTGGTGAAAATAATCAAGATGGTGGTGAAAATAATCAAGATGGCGAAAATAAC
CAAGATGGTGGTGAAAACAATCAAGATGATGGTGAAAATAANCAAGATGGCTGGTGAAAA
TAATCAAGATGGNGGTGAAAATNATNAAGATGATGGTGANAATAACCAAGATGGNGAAAA
TAACCAANATGGTGGTGAAAACAANCANNATGGTGATGAAXXXXXXXXXXGNTGGNGAAA
AATANTNANGANGGGTGNAGACCNAGTCAANATGGTGATNGAANATAAAAACCAAGAATG
GTNAAGCANNANCNAGNACGGGTGATGAAAATANANCAAGGATGGTGGTGAAAACAATCA
AGATGGGTGATGAAAATTAATAATNAAGATGGTGATGANAATAATAAATCAAGAATGGTG
GTGAAAATAATCAAGATGGTGGTGANAACAATCAAGATGGTGATGAANATAATAATCAAG
ATGGTGGTGAAAATAATCAAGATGGTGAAAACAATCAAGATGGTGATGAAAATAATAACC
AAGATGGTGAACAAAACCAAGACGGTGATGAAAATAACCAAGAGGGTGATGAAAATAATA
ACCAAGGTGACGATGAAAATAATAACCAAGACGGTGATGANAATAATAACCAAGATGGTG
ATGAAAATAACCAAGACGGTGATGAAAATAACCAAGACGGTGATGAAAATAATCAAGGTA
ATGATGAAAATAACCAAGATGGTGACCAAAATAACCAAGNGGGTGATGAAAATAACCAAG
ATGGTGATGGTGAAAATAATCAAGGTGATGAAAATAACCAAGATGGTGGTGANAATAATC
AAGATGGTGGCGAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
llayw**SMMVKTIEMXKIIKMVVKIIKMVVKIIKMAKITKMVVKTIKMMVKIXKMAGEN
NQDGGENXXDDGXNNQDGENNQXGGENXXXGDE---

---WXKIXXXGXDXVXMVXEXKNQEWXSXXXXG**kxxkdggennqdg**klixkmvmxi
inqeww*k*srww*xqsrw**x**srww*k*srw*kqsrw**k**prw*tkprr**k*pr
g**k**pr*r*k**prr**x**prw**k*prr**k*prr**k*sr***k*prw*pk*pxg
**k*prw*w*k*sr**k*prww*x*srwwrk
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvikydgennrdgennqdggennqdggennqdgennqdggennqddgenxqdgw*k
*srwx*kxxr*w*x*prwxk*pxww*kqxxw**---

---xgekxxxxvxtxsxw*xxiktkngxaxxxtgdenxxrmvvktikmgden**xrw**x
**iknggennqdggxnnqdgdexnnqdggennqdgennqdgdennnqdgeqnqdgdennq
egdennnqgddennnqdgdxnnnqdgdennqdgdennqdgdennqgndennqdgdqnnqx
gdennqdgdgennqgdennqdggxnnqdggen

Frame B:
llayw**SMMVKTIEMXKIIKMVVKIIKMVVKIIKMAKITKMVVKTIKMMVKIXKMAGEN
NQDGGENXXDDGXNNQDGENNQXGGENXXXGDE---

---xxknxxxgxrpsqxgdxx*kprmvkxxxxrvmkixqgww*kqsrwvmkinnxdgdxn
nksrmvvkiikmvvxtikmvmxiiikmvvkiikmvktikmvmkiitkmvnktktvmkitk
rvmkiitkvtmkiitktvmxiitkmvmkitktvmkitktvmkiikvmmkitkmvtkitkx
vmkitkmvmvkiikvmkitkmvvxiikmvaki

Frame C:
cwptgnkv*w*kqsrwxk*srww*k*srww*k*srwrk*prww*kqsr*w*k*xrwlvki
ikmxvkxxkmmvxitkmxkitxmvvktxxmvm---

---WXKIXXXGXDXVXMVXEXKNQEWXSXXXXG**kxxkdggennqdg**klixkmvmxi
inqeww*k*srww*xqsrw**x**srww*k*srw*kqsrw**k**prw*tkprr**k*pr
g**k**pr*r*k**prr**x**prw**k*prr**k*prr**k*sr***k*prw*pk*pxg
**k*prw*w*k*sr**k*prww*x*srwwrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC267 (CHC267Q) /CSM/CH/CHC2-C/CHC267Q.Seq.d/                       1540   0.0
CHI520 (CHI520Q) /CSM/CH/CHI5-A/CHI520Q.Seq.d/                        856   0.0
CFJ403 (CFJ403Q) /CSM/CF/CFJ4-A/CFJ403Q.Seq.d/                        825   0.0
SHA427 (SHA427Q) /CSM/SH/SHA4-B/SHA427Q.Seq.d/                        805   0.0
SHG247 (SHG247Q) /CSM/SH/SHG2-B/SHG247Q.Seq.d/                        745   0.0
AHC767 (AHC767Q) /CSM/AH/AHC7-C/AHC767Q.Seq.d/                        644   0.0
SLE877 (SLE877Q) /CSM/SL/SLE8-D/SLE877Q.Seq.d/                        589   e-167
SLC843 (SLC843Q) /CSM/SL/SLC8-B/SLC843Q.Seq.d/                        585   e-166
CHN681 (CHN681Q) /CSM/CH/CHN6-D/CHN681Q.Seq.d/                        468   e-131
SHJ731 (SHJ731Q) /CSM/SH/SHJ7-B/SHJ731Q.Seq.d/                        426   e-118
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  52   8e-12  3
BM276500|BM276500.1 PfESToaa84b09.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    54   2e-07  2
X76126|X76126.1 T.thermophila TAP1 gene polyA signal with multiple stop codons.    30   2e-07  8
BM275314|BM275314.1 PfESToaa67a07.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    54   3e-07  2
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    50   1e-06  16
X76125|X76125.1 T.thermophila TAP1 gene.                           30   1e-06  8
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    60   4e-06  2
CN597894|CN597894.1 TTE00007080 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.    26   3e-05  7
A18434|A18434.1 Hybrid DNA molecule comprising a nucleotide sequence from S.aureus  coding for a protein or polypeptide having collagen binding  activity.    38   5e-05  4
AR067706|AR067706.1 Sequence 1 from patent US 5851794.             38   6e-05  4
dna update 2004. 9.16
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 371,293,424
protein update 2009. 3.29
PSORT 

 psg: 0.76  gvh: 0.14  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for CHC267 is nuc
5' end seq. ID CHC267F
5' end seq. 
>CHC267F.Seq
ACTGTTGGCCTACTGGTAATAAAGTATGATGGTGAAAACAATCGAGATGGNGAAAATAAT
CAAGATGGTGGTGAAAATAATCAAGATGGTGGTGAAAATAATCAAGATGGCGAAAATAAC
CAAGATGGTGGTGAAAACAATCAAGATGATGGTGAAAATAANCAAGATGGCTGGTGAAAA
TAATCAAGATGGNGGTGAAAATNATNAAGATGATGGTGANAATAACCAAGATGGNGAAAA
TAACCAANATGGTGGTGAAAACAANCANNATGGTGATGAANNNNNNNNNN
Length of 5' end seq. 290
3' end seq. ID CHC267Z
3' end seq. 
>CHC267Z.Seq
NNNNNNNNNNGNTGGNGAAAAATANTNANGANGGGTGNAGACCNAGTCAANATGGTGATN
GAANATAAAAACCAAGAATGGTNAAGCANNANCNAGNACGGGTGATGAAAATANANCAAG
GATGGTGGTGAAAACAATCAAGATGGGTGATGAAAATTAATAATNAAGATGGTGATGANA
ATAATAAATCAAGAATGGTGGTGAAAATAATCAAGATGGTGGTGANAACAATCAAGATGG
TGATGAANATAATAATCAAGATGGTGGTGAAAATAATCAAGATGGTGAAAACAATCAAGA
TGGTGATGAAAATAATAACCAAGATGGTGAACAAAACCAAGACGGTGATGAAAATAACCA
AGAGGGTGATGAAAATAATAACCAAGGTGACGATGAAAATAATAACCAAGACGGTGATGA
NAATAATAACCAAGATGGTGATGAAAATAACCAAGACGGTGATGAAAATAACCAAGACGG
TGATGAAAATAATCAAGGTAATGATGAAAATAACCAAGATGGTGACCAAAATAACCAAGN
GGGTGATGAAAATAACCAAGATGGTGATGGTGAAAATAATCAAGGTGATGAAAATAACCA
AGATGGTGGTGANAATAATCAAGATGGTGGCGAAAATA
Length of 3' end seq. 638
Connected seq. ID CHC267P
Connected seq. 
>CHC267P.Seq
ACTGTTGGCCTACTGGTAATAAAGTATGATGGTGAAAACAATCGAGATGGNGAAAATAAT
CAAGATGGTGGTGAAAATAATCAAGATGGTGGTGAAAATAATCAAGATGGCGAAAATAAC
CAAGATGGTGGTGAAAACAATCAAGATGATGGTGAAAATAANCAAGATGGCTGGTGAAAA
TAATCAAGATGGNGGTGAAAATNATNAAGATGATGGTGANAATAACCAAGATGGNGAAAA
TAACCAANATGGTGGTGAAAACAANCANNATGGTGATGAA----------GNTGGNGAAA
AATANTNANGANGGGTGNAGACCNAGTCAANATGGTGATNGAANATAAAAACCAAGAATG
GTNAAGCANNANCNAGNACGGGTGATGAAAATANANCAAGGATGGTGGTGAAAACAATCA
AGATGGGTGATGAAAATTAATAATNAAGATGGTGATGANAATAATAAATCAAGAATGGTG
GTGAAAATAATCAAGATGGTGGTGANAACAATCAAGATGGTGATGAANATAATAATCAAG
ATGGTGGTGAAAATAATCAAGATGGTGAAAACAATCAAGATGGTGATGAAAATAATAACC
AAGATGGTGAACAAAACCAAGACGGTGATGAAAATAACCAAGAGGGTGATGAAAATAATA
ACCAAGGTGACGATGAAAATAATAACCAAGACGGTGATGANAATAATAACCAAGATGGTG
ATGAAAATAACCAAGACGGTGATGAAAATAACCAAGACGGTGATGAAAATAATCAAGGTA
ATGATGAAAATAACCAAGATGGTGACCAAAATAACCAAGNGGGTGATGAAAATAACCAAG
ATGGTGATGGTGAAAATAATCAAGGTGATGAAAATAACCAAGATGGTGGTGANAATAATC
AAGATGGTGGCGAAAATA
Length of connected seq. 908
Full length Seq ID -
Full length Seq. -
Length of full length seq. -