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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC266
Library CH
(Link to library)
Clone ID CHC266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID CHC266P
(Link to Original site)
Representative DNA sequence 
>CHC266 (CHC266Q) /CSM/CH/CHC2-C/CHC266Q.Seq.d/
TCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAATAATCAAATTGTG
GTCTTATTTTAATATTTTTTTTTAATAAATTAAGATGATGAAGCCAGATTTAAATAGTCC
ATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGA
GGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAA
GAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTXXXX
XXXXXXAGAATTTTAATCAATAAAGAAATTCAAAATTTTTAANACCAATAACATTTGGGT
CAATTTCAAANCAATGGATTGTATTTTNAAACAAAATNTTTTGGATGANATGGANATCAT
TATCAATCCAAAGGTTGCTGATGGTAAAAANATCATTCAATTGGANANTGCTGCTGGTGC
TGCAATTNAATTNTTTAACAANGCAAAAGGNGNCAATGNACCAANATCAAGATTTTTACC
AGTGAAANCAACCTCTGATCTCTTTANCGNTCNANCAAANCTNTACTCACTCGANAAGGG
TGNTTTGGNAATGAACAANAANAGACCNTTCNCCCCNGNTCCCTTGGTTAAANTGGGTGA
NAACTTTAAAAAGGTTTCANANTATCAAGCNCGGANCNAAGGNATTCCANANATTTTGGA
ATTGGATCAACNCCCCGNTTCTGGTGANANAACCNTTGGGCCNAANATGGNCCCCAAAGG
CCCTGTTANCANTGNTGCTAANCATGGNTCAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
hknlfl*nl**h*fiiiklwsyfniff**IKMMKPDLNSPLPQSPQLQSFGSRSSDLATE
DLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRF---

---RILINKEIQNF*xq*hlgqfqxnglyfxtkxfg*xgxhyqskgc*w*kxhsigxccw
ccnxix*qxkrxqxtxikiftsexnl*slxrsxkxxltrxgxfgneqxxtxxpxslg*xg
*xl*kgfxxssxxxrxsxxfgigstprfw*xnxwaxxgpqrpcxxxc*xwxx
Translated Amino Acid sequence (All Frames) 
Frame A:
s*kfifiksivtliynnqivvlf*yfflin*ddearfk*sittitttsiiwk*iirscnr
gfifeeigsnltnctk*nske*ifkqrntiyqqivypf---

---RILINKEIQNF*xq*hlgqfqxnglyfxtkxfg*xgxhyqskgc*w*kxhsigxccw
ccnxix*qxkrxqxtxikiftsexnl*slxrsxkxxltrxgxfgneqxxtxxpxslg*xg
*xl*kgfxxssxxxrxsxxfgigstprfw*xnxwaxxgpqrpcxxxc*xwxx

Frame B:
hknlfl*nl**h*fiiiklwsyfniff**IKMMKPDLNSPLPQSPQLQSFGSRSSDLATE
DLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRF---

---ef*sikkfkifxtnniwvnfkxmdcixkqnxldxmxiiinpkvadgkxiiqlxxaag
aaixxfnxakgxnxpxsrflpvkxtsdlfxxxxxlyslxkgxlxmnxxrpfxpxplvkxg
xnfkkvsxyqarxxgipxileldqxpxsgxxtxgpxmxpkgpvxxxaxhgsx

Frame C:
ikiyfykiysntnl**sncglilifffnklr**sqi*ivhyhnhhnfnhlevdhqilqpr
iyf*rnwkqshklhqmkq*rmnf*tkkyhlstnclpvs---

---nfnq*rnskflxpitfgsisxqwivfxnkxfwmxwxslsiqrllmvkxsfnwxxllv
lqxnxltxqkxxmxqxqdfyq*xqplislxxxqxxthsxrvxwx*txxdxspxxpwlxwv
xtlkrfxxikxgxkxfxxfwnwinxpxlvxxplgxxwxpkallxxxlxmxq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC266 (CHC266Q) /CSM/CH/CHC2-C/CHC266Q.Seq.d/                       1140   0.0
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                        567   e-160
SFL292 (SFL292Q) /CSM/SF/SFL2-D/SFL292Q.Seq.d/                        567   e-160
SFJ475 (SFJ475Q) /CSM/SF/SFJ4-D/SFJ475Q.Seq.d/                        567   e-160
SFI134 (SFI134Q) /CSM/SF/SFI1-B/SFI134Q.Seq.d/                        567   e-160
SFH161 (SFH161Q) /CSM/SF/SFH1-C/SFH161Q.Seq.d/                        567   e-160
SFG824 (SFG824Q) /CSM/SF/SFG8-A/SFG824Q.Seq.d/                        567   e-160
SFC341 (SFC341Q) /CSM/SF/SFC3-B/SFC341Q.Seq.d/                        567   e-160
CHD685 (CHD685Q) /CSM/CH/CHD6-D/CHD685Q.Seq.d/                        567   e-160
CHB571 (CHB571Q) /CSM/CH/CHB5-C/CHB571Q.Seq.d/                        567   e-160
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.   428   0.0    4
L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.   196   7e-51  2
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    36   0.007  10
CE707269|CE707269.1 tigr-gss-dog-17000369231136 Dog Library Canis familiaris genomic, genomic survey sequence.    44   0.008  2
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   0.029  9
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    36   0.031  11
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38   0.049  11
AX392735|AX392735.1 Sequence 25 from Patent WO0212526.             50   0.057  1
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    50   0.057  1
BQ089742|BQ089742.1 rc52d03.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    40   0.12   2
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   182   8e-45
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   117   3e-25
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   117   3e-25
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   117   3e-25
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   117   4e-25
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   117   4e-25
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   117   4e-25
AJ719970_1(AJ719970|pid:none) Gallus gallus mRNA for hypothetica...   115   2e-24
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos...   115   2e-24
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   114   3e-24
protein update 2009. 3.29
PSORT 

 psg: 0.76  gvh: 0.42  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CHC266 is cyt
5' end seq. ID CHC266F
5' end seq. 
>CHC266F.Seq
TCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAATAATCAAATTGTG
GTCTTATTTTAATATTTTTTTTTAATAAATTAAGATGATGAAGCCAGATTTAAATAGTCC
ATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGA
GGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAA
GAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTNNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID CHC266Z
3' end seq. 
>CHC266Z.Seq
NNNNNNNNNNAGAATTTTAATCAATAAAGAAATTCAAAATTTTTAANACCAATAACATTT
GGGTCAATTTCAAANCAATGGATTGTATTTTNAAACAAAATNTTTTGGATGANATGGANA
TCATTATCAATCCAAAGGTTGCTGATGGTAAAAANATCATTCAATTGGANANTGCTGCTG
GTGCTGCAATTNAATTNTTTAACAANGCAAAAGGNGNCAATGNACCAANATCAAGATTTT
TACCAGTGAAANCAACCTCTGATCTCTTTANCGNTCNANCAAANCTNTACTCACTCGANA
AGGGTGNTTTGGNAATGAACAANAANAGACCNTTCNCCCCNGNTCCCTTGGTTAAANTGG
GTGANAACTTTAAAAAGGTTTCANANTATCAAGCNCGGANCNAAGGNATTCCANANATTT
TGGAATTGGATCAACNCCCCGNTTCTGGTGANANAACCNTTGGGCCNAANATGGNCCCCA
AAGGCCCTGTTANCANTGNTGCTAANCATGGNTCAANA
Length of 3' end seq. 518
Connected seq. ID CHC266P
Connected seq. 
>CHC266P.Seq
TCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAATAATCAAATTGTG
GTCTTATTTTAATATTTTTTTTTAATAAATTAAGATGATGAAGCCAGATTTAAATAGTCC
ATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGA
GGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAA
GAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCT----
------AGAATTTTAATCAATAAAGAAATTCAAAATTTTTAANACCAATAACATTTGGGT
CAATTTCAAANCAATGGATTGTATTTTNAAACAAAATNTTTTGGATGANATGGANATCAT
TATCAATCCAAAGGTTGCTGATGGTAAAAANATCATTCAATTGGANANTGCTGCTGGTGC
TGCAATTNAATTNTTTAACAANGCAAAAGGNGNCAATGNACCAANATCAAGATTTTTACC
AGTGAAANCAACCTCTGATCTCTTTANCGNTCNANCAAANCTNTACTCACTCGANAAGGG
TGNTTTGGNAATGAACAANAANAGACCNTTCNCCCCNGNTCCCTTGGTTAAANTGGGTGA
NAACTTTAAAAAGGTTTCANANTATCAAGCNCGGANCNAAGGNATTCCANANATTTTGGA
ATTGGATCAACNCCCCGNTTCTGGTGANANAACCNTTGGGCCNAANATGGNCCCCAAAGG
CCCTGTTANCANTGNTGCTAANCATGGNTCAANA
Length of connected seq. 804
Full length Seq ID -
Full length Seq. -
Length of full length seq. -