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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC240
Library CH
(Link to library)
Clone ID CHC240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID CHC240P
(Link to Original site)
Representative DNA sequence 
>CHC240 (CHC240Q) /CSM/CH/CHC2-B/CHC240Q.Seq.d/
TGTTGGCCTACTGGAATGCAAATTTTTGTTAAAACACTTACTGGAAAGACCATTACTCTT
GAAGTAGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGT
ATCCCACCAGATCAACAACGTCTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACT
CTCTCTGACTATAACATTCAAAAGGAATCCACTCTCCATTTAGTACTTAGATTAAGAGGT
GGTATGCAAATCTTTGTAAAGACCCTCACCGGTAAGACTATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC
AATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATC
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTANAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCCTCANATTAANAGGNGGTATGCAAATTTTTGTCAAACC
CTCACTGGTAANACTATTACACTCNAAATTGAANGTTCTGATACCTTTGNAATGTTAAAN
CCCAAATCCAAGACAAANAAAGGTTTCCCCCANATCCAACAACGTNTTATTTTCCCCGGN
AAANAATNGGAXXXXXXXXXXAGGTGGTATGCAAATTTTNTAAANCCCNCCCCGGNAANG
CTNTTACNCTNAAAGTTAAAGGTAGTGCCACCTTNANAATGTAAANCCAAGATTCAAGAN
AAAGAAGGGTTTCCCCCCAGATCANCAACGTTTCATTTTTTGNTGGTAACCATTANAAGA
TGGTNGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAG
ATTAANAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGA
AGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTAT
CCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCT
CTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGG
TATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTC
TGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA
ACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAA
CATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTT
TGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGA
GAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTCAT
TTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGA
ATCAACACTCCATTTAGTTCTCAGAATTAANAGGNGAAGATTAAAATNACCCACACACAA
AAT
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNI
ENVKTKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVPXIXRXYANFCQT
LTGXTITLXIEXSDTFXMLXPKSKTXKGFPXIQQRXIFPGKXX---

---RWYANFXXPXPXXLLXXKLKVVPPXXCKXKIQXKEGFPPRSXTFHFLXVTIXRWXYS
L*lqypkrinsplgpqixrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrp
tkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*
ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfckns
hw*nhytrs*r**qh*ecknknsrqrryptrsttshfrr*tirrwsysf*lqhskgintp
fssqn*xxkikxthtqn
Translated Amino Acid sequence (All Frames) 
Frame A:
CWPTGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNI
ENVKTKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVPXIXRXYANFCQT
LTGXTITLXIEXSDTFXMLXPKSKTXKGFPXIQQRXIFPGKXX---

---RWYANFXXPXPXXLLXXKLKVVPPXXCKXKIQXKEGFPPRSXTFHFLXVTIXRWXYS
L*lqypkrinsplgpqixrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrp
tkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*
ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfckns
hw*nhytrs*r**qh*ecknknsrqrryptrsttshfrr*tirrwsysf*lqhskgintp
fssqn*xxkikxthtqn

Frame B:
vglleckfllkhllerplllk*kvliilkm*rlkfktkkvshqinnvlfllvnnwkmvvl
sltitfkrnplsi*yld*evvcksl*rpspvrllhsklkvvttlrm*kqrfkikkvfhqi
nnvsfslvnn*kmvvlslitiskknqlstwssd*evvckslskh*lvrpsllklraqiil
kmlkqrfktkkvshqtnkd*fslvnnxkmvvlslittfkrnplsi*slxlxggmqifvkp
slvxllhsklxvliplxc*xpnprqxkvspxsnnvlfspxxnx---

---ggmqix*xpprxxxyxxs*r*chlxnvxprfkxkkgfppdxqrfifxw*plxdgxtl
sdyniqkestlhlvlrlxggmqifvktltgktitlevegsdnienvktkiqdkegippdq
qrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnie
nvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktl
tgktitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniqkestlh
lvlrixrxrlkxpthk

Frame C:
laywnanfc*ntywkdhys*srrf**y*kckg*nsrqrryptrsttsyfcw*tigrwsys
l*l*hskgihspfst*ikrwyanlckdphr*dyytrs*r**qh*ecknkdsr*rrystrs
ttshfrw*tirrwsysl*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*
kc*nkdsrqrryptrptkinfrw*tixrwsysl*lqhskgihspfspsx*xxvckflsnp
hw*xyytxn*xf*ylxnvkxqiqdkxrfppxpttxyfprxxxg---

---vvckfxkxxpgxaxtlkvkgsatxxm*xqdsrxrrvspqixnvsffxgnhxkmvvls
litiskknqlstwssd*xvvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqtn
kd*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlr
mlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*kls
lvkplhsklkvvttlrm*kqkfktkkvshqinnvsfspvnn*kmvvlflittfkrnqhsi
*fselxged*nxphtk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC240 (CHC240Q) /CSM/CH/CHC2-B/CHC240Q.Seq.d/                       3265   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                       1513   0.0
CFH562 (CFH562Q) /CSM/CF/CFH5-C/CFH562Q.Seq.d/                       1489   0.0
SFD428 (SFD428Q) /CSM/SF/SFD4-B/SFD428Q.Seq.d/                       1483   0.0
SFC119 (SFC119Q) /CSM/SF/SFC1-A/SFC119Q.Seq.d/                       1483   0.0
SFB344 (SFB344Q) /CSM/SF/SFB3-B/SFB344Q.Seq.d/                       1469   0.0
SFC110 (SFC110Q) /CSM/SF/SFC1-A/SFC110Q.Seq.d/                       1467   0.0
CFA841 (CFA841Q) /CSM/CF/CFA8-B/CFA841Q.Seq.d/                       1459   0.0
SFG442 (SFG442Q) /CSM/SF/SFG4-B/SFG442Q.Seq.d/                       1451   0.0
CHD396 (CHD396Q) /CSM/CH/CHD3-D/CHD396Q.Seq.d/                       1445   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1469   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1453   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1437   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   874   0.0    7
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   797   0.0    5
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   680   0.0    4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   589   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   589   0.0    4
AB122067|AB122067.1 Crassostrea gigas mRNA for polyubiquitin, complete cds.   145   e-161  17
X61053|X61053.1 T.pyriformis TU20 gene for ubiquitin.             167   e-154  8
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   489   e-136
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   489   e-136
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   486   e-136
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   485   e-135
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   473   e-132
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   471   e-131
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   471   e-131
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   471   e-131
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   471   e-131
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   471   e-131
protein update 2009. 3.29
PSORT 

 psg: 0.78  gvh: 0.38  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 1.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHC240 is nuc
5' end seq. ID CHC240F
5' end seq. 
>CHC240F.Seq
TGTTGGCCTACTGGAATGCAAATTTTTGTTAAAACACTTACTGGAAAGACCATTACTCTT
GAAGTAGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGT
ATCCCACCAGATCAACAACGTCTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACT
CTCTCTGACTATAACATTCAAAAGGAATCCACTCTCCATTTAGTACTTAGATTAAGAGGT
GGTATGCAAATCTTTGTAAAGACCCTCACCGGTAAGACTATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC
AATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATC
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTANAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCCTCANATTAANAGGNGGTATGCAAATTTTTGTCAAACC
CTCACTGGTAANACTATTACACTCNAAATTGAANGTTCTGATACCTTTGNAATGTTAAAN
CCCAAATCCAAGACAAANAAAGGTTTCCCCCANATCCAACAACGTNTTATTTTCCCCGGN
AAANAATNGGANNNNNNNNNN
Length of 5' end seq. 861
3' end seq. ID CHC240Z
3' end seq. 
>CHC240Z.Seq
NNNNNNNNNNAGGTGGTATGCAAATTTTNTAAANCCCNCCCCGGNAANGCTNTTACNCTN
AAAGTTAAAGGTAGTGCCACCTTNANAATGTAAANCCAAGATTCAAGANAAAGAAGGGTT
TCCCCCCAGATCANCAACGTTTCATTTTTTGNTGGTAACCATTANAAGATGGTNGTACTC
TCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAANAGGTG
GTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCT
CAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACC
AACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACA
ACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTT
TTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTG
AGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCA
TTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGG
AATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTC
TCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAA
CAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTCATTTTCGCCGGTA
AACAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAATCAACACTCC
ATTTAGTTCTCAGAATTAANAGGNGAAGATTAAAATNACCCACACACAAAAT
Length of 3' end seq. 952
Connected seq. ID CHC240P
Connected seq. 
>CHC240P.Seq
TGTTGGCCTACTGGAATGCAAATTTTTGTTAAAACACTTACTGGAAAGACCATTACTCTT
GAAGTAGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGT
ATCCCACCAGATCAACAACGTCTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACT
CTCTCTGACTATAACATTCAAAAGGAATCCACTCTCCATTTAGTACTTAGATTAAGAGGT
GGTATGCAAATCTTTGTAAAGACCCTCACCGGTAAGACTATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC
AATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATC
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTANAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCCTCANATTAANAGGNGGTATGCAAATTTTTGTCAAACC
CTCACTGGTAANACTATTACACTCNAAATTGAANGTTCTGATACCTTTGNAATGTTAAAN
CCCAAATCCAAGACAAANAAAGGTTTCCCCCANATCCAACAACGTNTTATTTTCCCCGGN
AAANAATNGGA----------AGGTGGTATGCAAATTTTNTAAANCCCNCCCCGGNAANG
CTNTTACNCTNAAAGTTAAAGGTAGTGCCACCTTNANAATGTAAANCCAAGATTCAAGAN
AAAGAAGGGTTTCCCCCCAGATCANCAACGTTTCATTTTTTGNTGGTAACCATTANAAGA
TGGTNGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAG
ATTAANAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGA
AGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTAT
CCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCT
CTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGG
TATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTC
TGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA
ACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAA
CATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTT
TGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGA
GAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTCAT
TTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGA
ATCAACACTCCATTTAGTTCTCAGAATTAANAGGNGAAGATTAAAATNACCCACACACAA
AAT
Length of connected seq. 1793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -