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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC215
Library CH
(Link to library)
Clone ID CHC215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/
XXXXXXXXXXTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCT
GGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATT
GCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCA
TCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAA
CAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAA
GTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAA
CAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATAC
AAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTAT
GAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGAT
GAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATT
AATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGAC
TATCATAANGATCAAACGAAGAATTAAAAGNANAGCATTANA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPS
QDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQ
NQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDE
QQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHXDQTKN*kxsix
Translated Amino Acid sequence (All Frames) 
Frame A:
---**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i*l*stih**ilrfnsi
tr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywst
ksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieftrrsrti*tfirstl**
ttttttksfk*tttsrttn*ftrgysisiksfkstipr*ls*xsneelkxxhx


Frame B:
---SETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPS
QDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQ
NQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDE
QQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHXDQTKN*kxsix


Frame C:
---vrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinptvqfhh
kimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvnk
ikkiknn*liykienlvytkinkilnkrkepinkn*simn*iykkiknnmnfy*insmmn
nnnnhkkfqinnnfknnklihprifnin*ii*inhskmtiixikrrikxxal
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1059   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1059   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1059   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1059   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1059   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1059   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1059   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1059   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                       1051   0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1043   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1059   0.0    1
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    32   3e-04  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   7e-04  14
AE016747|AE016747.1 Staphylococcus epidermidis ATCC 12228, section 4 of 9 of the complete genome.    38   0.001  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.002  14
AE017163|AE017163.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 3 of 6 of the complete genome.    34   0.004  13
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   0.005  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.005  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.006  28
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.006  12
dna update 2003.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   355   9e-97
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   8e-05
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   7e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.002
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    45   0.003
protein update 2009. 5.17
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHC215 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC215Z
3' end seq. 
>CHC215Z.Seq
NNNNNNNNNNTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCT
GGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATT
GCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCA
TCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAA
CAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAA
GTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAA
CAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATAC
AAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTAT
GAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGAT
GAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATT
AATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGAC
TATCATAANGATCAAACGAAGAATTAAAAGNANAGCATTANA
Length of 3' end seq. 702
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -