CHC212
Library CH
(Link to library)
Clone ID CHC212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16248-1
Original site URL
Representative seq. ID CHC212P
(Link to Original site)
Representative DNA sequence
>CHC212 (CHC212Q) /CSM/CH/CHC2-A/CHC212Q.Seq.d/
AAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAA
ACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACC
TTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAAT
GAAGCTGATGCTTTAAATTTATTATTAAATGGAATCCCAAAAGGTTCTGAAGTCATGTGC
GCTAGCAGTTGTACCATTGATGAAGTCGGTTTCAAGAAAATTTATTTCAGTGATGATTCT
CCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCT
CGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACT
GGAAATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAA
AATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATTACCCGTNCCA
AAGAACTGAACAATTCTGTTTACCATGTGXXXXXXXXXXAAACCAACAAAGGTAAATAAA
TAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTT
GATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTTAATGGAAACTGTCAAGAA
TTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTT
ATTATTAAATGGAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGA
TGAAGTCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAA
AAAGATTTTAGCTTTAC
sequence update 2002.10.25
Translated Amino Acid sequence
nqqr*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqslkm
klml*iyy*mesqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklml
vkml*phntfyhl*lqspklemfmlptlqvpelavslllki*SSFLVITRLLILMNYPXQ
RTEQFCLPC---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetfngncqefrsqepqsfs
r*k*s*cfkfiikwnpkrf*shvr*qlyh**srfqenlfq**fsirqrs*kdfsf


Translated Amino Acid sequence (All Frames)
Frame A:
kptkvnk**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsvven
eadalnlllngipkgsevmcassctidevgfkkiyfsddspfvnvhkkilalpadkqada
rkdaltsqyflssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdelpvp
kn*tilftm---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetfngncqefrsqepqsfs
r*k*s*cfkfiikwnpkrf*shvr*qlyh**srfqenlfq**fsirqrs*kdfsf

Frame B:
nqqr*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqslkm
klml*iyy*mesqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklml
vkml*phntfyhl*lqspklemfmlptlqvpelavslllki*SSFLVITRLLILMNYPXQ
RTEQFCLPC---

---nqqr*innklrc*hsnn*kkpkkisllmkinselhqamkplmetvknleaknhrvsv
veneadalnlllngipkgsevmcassctidevgfkkiyfsddspfvnvhkkilal

Frame C:
tnkgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*
s*cfkfiikwnpkrf*shvr*qlyh**srfqenlfq**fsirqrs*kdfsfts**ts*cs
*rcfnltilfiicncnlqnwkclccrrfryqswrfhcc*kfnhrfwl*qdc*f**itrxk
elnnsvyhv---

---tnkgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nl*wklsri*kprttefqs
lkmklml*iyy*mesqkvlkscalavvplmksvsrkfisvmilhsstfikrf*ly

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHC212 (CHC212Q) /CSM/CH/CHC2-A/CHC212Q.Seq.d/ 1752 0.0
SHF652 (SHF652Q) /CSM/SH/SHF6-C/SHF652Q.Seq.d/ 1088 0.0
CHL741 (CHL741Q) /CSM/CH/CHL7-B/CHL741Q.Seq.d/ 1088 0.0
CHL558 (CHL558Q) /CSM/CH/CHL5-C/CHL558Q.Seq.d/ 1088 0.0
CHL388 (CHL388Q) /CSM/CH/CHL3-D/CHL388Q.Seq.d/ 1088 0.0
CFK289 (CFK289Q) /CSM/CF/CFK2-D/CFK289Q.Seq.d/ 1088 0.0
SHF256 (SHF256Q) /CSM/SH/SHF2-C/SHF256Q.Seq.d/ 1078 0.0
CHG794 (CHG794Q) /CSM/CH/CHG7-D/CHG794Q.Seq.d/ 1078 0.0
VFE226 (VFE226Q) /CSM/VF/VFE2-B/VFE226Q.Seq.d/ 1074 0.0
SHK631 (SHK631Q) /CSM/SH/SHK6-B/SHK631Q.Seq.d/ 1074 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ310674|AJ310674.1 Dictyostelium discoideum 3B gene for prespore-specific protein 3B,. 682 0.0 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 682 0.0 20
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 38 8e-09 15
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 36 1e-07 20
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 1e-06 20
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 34 1e-06 19
AR409405|AR409405.1 Sequence 1 from patent US 6632935. 34 1e-06 19
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 38 3e-06 10
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome. 36 6e-06 10
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence. 32 3e-05 15
dna update 2004. 9.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom... 166 1e-39
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom... 156 8e-37
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304... 99 2e-19
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete... 65 4e-09
CP001393_1815(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 64 7e-09
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC... 59 2e-07
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 59 2e-07
CP001146_1364(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 54 7e-06
AE015927_1863(AE015927|pid:none) Clostridium tetani E88, complet... 54 9e-06
CP000361_1543(CP000361|pid:none) Arcobacter butzleri RM4018, com... 52 2e-05
protein update 2009. 3.29
PSORT

psg: 0.85 gvh: 0.37 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: mitochondrial
20.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHC212 is cyt

5' end seq. ID CHC212F
5' end seq.
>CHC212F.Seq
AAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAA
ACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACC
TTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAAT
GAAGCTGATGCTTTAAATTTATTATTAAATGGAATCCCAAAAGGTTCTGAAGTCATGTGC
GCTAGCAGTTGTACCATTGATGAAGTCGGTTTCAAGAAAATTTATTTCAGTGATGATTCT
CCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCT
CGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACT
GGAAATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAA
AATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATTACCCGTNCCA
AAGAACTGAACAATTCTGTTTACCATGTGNNNNNNNNNN
Length of 5' end seq. 579
3' end seq. ID CHC212Z
3' end seq.
>CHC212Z.Seq
NNNNNNNNNNAAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACA
ATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAG
CAATGAAACCTTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAG
TCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGGAATCCCAAAAGGTTCTG
AAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAGTCGGTTTCAAGAAAATTTATTTCA
GTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTAC
Length of 3' end seq. 348
Connected seq. ID CHC212P
Connected seq.
>CHC212P.Seq
AAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAA
ACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACC
TTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAAT
GAAGCTGATGCTTTAAATTTATTATTAAATGGAATCCCAAAAGGTTCTGAAGTCATGTGC
GCTAGCAGTTGTACCATTGATGAAGTCGGTTTCAAGAAAATTTATTTCAGTGATGATTCT
CCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCT
CGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACT
GGAAATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAA
AATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATTACCCGTNCCA
AAGAACTGAACAATTCTGTTTACCATGTG----------AAACCAACAAAGGTAAATAAA
TAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTT
GATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTTAATGGAAACTGTCAAGAA
TTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTT
ATTATTAAATGGAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGA
TGAAGTCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAA
AAAGATTTTAGCTTTAC
Length of connected seq. 907
Full length Seq ID -
Full length Seq. -
Length of full length seq. -