CHC207
Library CH
(Link to library)
Clone ID CHC207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID CHC207P
(Link to Original site)
Representative DNA sequence
>CHC207 (CHC207Q) /CSM/CH/CHC2-A/CHC207Q.Seq.d/
GTTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATT
ACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGTT
CATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGTATTGNAATACCATCA
AAATGGGTAACTGCAAAATTAATAXXXXXXXXXXGANAAAGATAATGAAGCAAGTGGTAG
TAGTAACAATAATNATGATGNNAATTTAAATAAAAACCATATTGNNAATAGTAGTGAATT
TACATCNCCATCATTTGATTATCATCATTTAGATGAATTAGNAAAGGAAAGANAGNAACA
AGATTANGAAATCATTTGTAATATTGAACCAATTAAATTCANNGGCCAAAATGAAGGATT
ATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGNACGTATTGATTNATCANNATG
TCAAGAATTAAANATNNAGGTTGANACAGTTNATCCATCCNTTGAAAAGGGAACAGTATC
ATTTTCTGATGATANNCGTTTAGAATGTAACTCTGNCCCNGAACCAGGTTACTNTGAATC
CTCATTAATCTTTTCNAAGTGGTGATGCACCATTTATTGGTTTGGTNAAGTCACAATATA
TGNCTAANCCNAATAAACTATTATTGTATACCAACTTCNA
sequence update 2002.10.25
Translated Amino Acid sequence
VNAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLI
ENEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVVHHSTFPQDKIIFNVGIXIPS
KWVTAKLI---

---XKDNEASGSSNNNXDXNLNKNHIXNSSEFTSPSFDYHHLDELXKERXXQDXEIICNI
EPIKFXGQNEGLLGKDIILCGFPKXRIDXSXCQELXXXVXTVXPSXEKGTVSFSDDXRLE
CNSXPEPGYXESSLIFSKW*ctiywfgxvtiyx*xx*tiivyqlx


Translated Amino Acid sequence (All Frames)
Frame A:
VNAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLI
ENEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVVHHSTFPQDKIIFNVGIXIPS
KWVTAKLI---

---XKDNEASGSSNNNXDXNLNKNHIXNSSEFTSPSFDYHHLDELXKERXXQDXEIICNI
EPIKFXGQNEGLLGKDIILCGFPKXRIDXSXCQELXXXVXTVXPSXEKGTVSFSDDXRLE
CNSXPEPGYXESSLIFSKW*ctiywfgxvtiyx*xx*tiivyqlx

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyteiyihnlkyfkh*kktkvyqvvvvevvvvevvvi*ivlilvili*mmi*l
kmklltgqf*lelvqfihllhlxlvvelvkt*ywfqnmlfiiqlflkiksfsmlvlxyhq
ng*lqn*---

---xkimkqvvvvtixmmxi*iktilxivvnlhxhhliiii*mn*xrkxxnkixksfvil
nqlnsxakmkdywvkilfyvvfqrxvlixxxvkn*xxrlxqxihplkreqyhflmixv*n
vtlxxnqvtxnph*sfxsgdapfiglvksqymxxpnklllytnf

Frame C:
*cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfsk
nvtlwsctiqkfiftt*nisnikkkqkyik*wwwrw**wrw*lfk*y*yw*y*fk**fn*
k*ny*qdsfn*swynsyiyyiwxwl*nw*klnigfktccssfnfssr*nhfqcwyxntik
mgnckin---

---xr**skw***q*x*xxfk*kpyxx***iyixii*lssfr*ixkgkxxtrlxnhl*y*
tn*ixxpk*riig*ryyfmwfskgty*xixmsrikxxg*xsxsix*kgnsiif**xxfrm
*lxpxtrll*ilinlfxvvmhhllvwxshnixlxxinyycipts

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHC207 (CHC207Q) /CSM/CH/CHC2-A/CHC207Q.Seq.d/ 1681 0.0
AFI195 (AFI195Q) /CSM/AF/AFI1-D/AFI195Q.Seq.d/ 894 0.0
SFB880 (SFB880Q) /CSM/SF/SFB8-D/SFB880Q.Seq.d/ 801 0.0
SFJ513 (SFJ513Q) /CSM/SF/SFJ5-A/SFJ513Q.Seq.d/ 704 0.0
SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/ 700 0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/ 700 0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/ 700 0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/ 700 0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/ 700 0.0
SFD336 (SFD336Q) /CSM/SF/SFD3-B/SFD336Q.Seq.d/ 700 0.0

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 44 8e-11 21
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 2e-09 17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 6e-09 20
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 38 5e-08 14
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 56 2e-07 2
AC115510|AC115510.4 Rattus norvegicus clone CH230-383C9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 52 5e-07 5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 2e-06 20
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 38 4e-05 10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 4e-05 19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 5e-05 13
dna update 2004. 9.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos... 43 0.015
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for... 36 2.5
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial... 35 3.2
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part... 35 3.2
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL... 35 3.2
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 4.2
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif... 35 4.2
(Q0VC65) RecName: Full=Transcription factor ETV6; &BC120331_1(B... 35 4.2
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien. 35 4.2
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 5.5
protein update 2009. 3.29
PSORT

psg: 0.47 gvh: 0.26 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHC207 is cyt

5' end seq. ID CHC207F
5' end seq.
>CHC207F.Seq
GTTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATT
ACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGTT
CATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGTATTGNAATACCATCA
AAATGGGTAACTGCAAAATTAATANNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID CHC207Z
3' end seq.
>CHC207Z.Seq
NNNNNNNNNNGANAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATNATGATGNNAA
TTTAAATAAAAACCATATTGNNAATAGTAGTGAATTTACATCNCCATCATTTGATTATCA
TCATTTAGATGAATTAGNAAAGGAAAGANAGNAACAAGATTANGAAATCATTTGTAATAT
TGAACCAATTAAATTCANNGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATG
TGGTTTTCCAAAGGNACGTATTGATTNATCANNATGTCAAGAATTAAANATNNAGGTTGA
NACAGTTNATCCATCCNTTGAAAAGGGAACAGTATCATTTTCTGATGATANNCGTTTAGA
ATGTAACTCTGNCCCNGAACCAGGTTACTNTGAATCCTCATTAATCTTTTCNAAGTGGTG
ATGCACCATTTATTGGTTTGGTNAAGTCACAATATATGNCTAANCCNAATAAACTATTAT
TGTATACCAACTTCNA
Length of 3' end seq. 496
Connected seq. ID CHC207P
Connected seq.
>CHC207P.Seq
GTTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATT
ACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGTT
CATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGTATTGNAATACCATCA
AAATGGGTAACTGCAAAATTAATA----------GANAAAGATAATGAAGCAAGTGGTAG
TAGTAACAATAATNATGATGNNAATTTAAATAAAAACCATATTGNNAATAGTAGTGAATT
TACATCNCCATCATTTGATTATCATCATTTAGATGAATTAGNAAAGGAAAGANAGNAACA
AGATTANGAAATCATTTGTAATATTGAACCAATTAAATTCANNGGCCAAAATGAAGGATT
ATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGNACGTATTGATTNATCANNATG
TCAAGAATTAAANATNNAGGTTGANACAGTTNATCCATCCNTTGAAAAGGGAACAGTATC
ATTTTCTGATGATANNCGTTTAGAATGTAACTCTGNCCCNGAACCAGGTTACTNTGAATC
CTCATTAATCTTTTCNAAGTGGTGATGCACCATTTATTGGTTTGGTNAAGTCACAATATA
TGNCTAANCCNAATAAACTATTATTGTATACCAACTTCNA
Length of connected seq. 1050
Full length Seq ID -
Full length Seq. -
Length of full length seq. -