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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF409
Library AF
(Link to library)
Clone ID AFF409
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12602-1|Contig-U16365-1
Original site URL
Representative seq. ID AFF409P
(Link to Original site)
Representative DNA sequence 
>AFF409 (AFF409Q) /CSM/AF/AFF4-A/AFF409Q.Seq.d/
CTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACAC
AGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTC
AAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCC
AAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGA
TATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTC
ATTTTTAAATATTTTAGATACCAGCAGNTCTAGTTCAAGCTCAAGCAGNNCTAGTTCAAG
CAGTTCTAGTTCCAGCTCAAGCAXXXXXXXXXXAGNTGNTNATCATCATCATCATCATCA
TCATCATCATCATCATGAAGNNGCAAGATNATCATCATCANGAAGNTGAAGATNATNATC
ATCATGAAGNNGGAGNNGAAGATNATCATCATGAAGTNGAAGATGAAGATGATNATCATN
AAGCNNANGNTNATNANGCAGCTCATCATCATCATCATCANGNAGCNGAAGTTGATCATC
ATCANGATNTTNATCANGATNAAGTAGNNGAAGNTGTTNATCANGATNAAGCAGCNGAAG
NTGTTNATCANGNTGNAGTAGTNGATNTNGTNGTNGNTGTTNATCANGATGAAGNTNCTC
ANGNNGAAGCAGTTGATNANGNTNCTCANGNNNAAGCAGTTGATCANGNAGTNGNTNANG
NTNCTCAAGNNNAAGCAGTNGATNANGNTNCTCANGCNGAAGCTGTTCATCANGNNGAAG
NNGNAGNNGAAGCTNCTCATCANGNNNNAGCTNNTCATCANNNAGCNNATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGCTC
ATCAAGTTCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGGGAGAAAACNAA
TTTAAAANATATAATAT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
yanrkiiskkhkyrisqthte*rnfpvflink*IINIYKSKKMDSKWFFIVLISFLLVLP
SIVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSXSSSSSSXXSSS
SSSSSSS---

---XXIIIIIIIIIIIMKXQDXHHXEXEDXXHHEXGXEDXHHEVEDEDDXHXAXXXXAAH
HHHHXXAEVDHHXDXXXDXVXEXVXXDXAAEXVXXXXVVDXVVXVXXDEXXXXEAVDXXX
XXXAVDXXVXXXXQXXAVDXXXXAEAVHXXEXXXEAXHXXXAXHXXAXHHHHHHHHHHHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVL
AQAVLVQGRKXI*xi*y
Translated Amino Acid sequence (All Frames) 
Frame A:
lck*kdhlketqiqnltnthritqlssvfnk*innkyi*vkengl*mvfycinkffigss
kyshtl*kec*nnk*rttkryisirkn**dgrsrrfgccfifkyfryqqx*fklkqx*fk
qf*fqlk---

---xxxsssssssssss*xxkxiiixkxkxxiimkxexkxiimkxkmkmxixkxxxxxql
iiiiixxxkliiixxxixxk*xkxxixxkqxkxxixxx*xxxxxxxixmkxlxxkqlxxx
lxxkqlixxxxxxlkxkqxxxxlxxklfixxkxxxkllixxxlxixxxiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiklkqlikfklkqf
*lkqf*fkgenxfkxyn

Frame B:
yanrkiiskkhkyrisqthte*rnfpvflink*IINIYKSKKMDSKWFFIVLISFLLVLP
SIVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSXSSSSSSXXSSS
SSSSSSS---

---xxxhhhhhhhhhhhexarxsssxx*rxxss*xxxxrxss*sxr*r*xsxsxxxxxss
sssssxsxs*sssxxxsxxsxxxcxsxxssxxcxsxxssxxxxxcxsx*xxsxxss*xxx
sxxss*sxsxxxxsxxssxxxxsxxscssxxxxxxsxssxxsxssxsxssssssssssss
ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss
sssssssrektnlkxii

Frame C:
mqierssqrntnteshkhtqnnatfqcf**ink**iyisqrkwtlngflly**vfywffq
v*shliervlk*qmknhkeiyin*kklirwqk*eiwvllhf*if*ipaxlvqaqaxlvqa
vlvpaqa---

---XXIIIIIIIIIIIMKXQDXHHXEXEDXXHHEXGXEDXHHEVEDEDDXHXAXXXXAAH
HHHHXXAEVDHHXDXXXDXVXEXVXXDXAAEXVXXXXVVDXVVXVXXDEXXXXEAVDXXX
XXXAVDXXVXXXXQXXAVDXXXXAEAVHXXEXXXEAXHXXXAXHXXAXHHHHHHHHHHHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVL
AQAVLVQGRKXI*xi*y
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF209 (VFF209Q) /CSM/VF/VFF2-A/VFF209Q.Seq.d/                        509   e-143
VFB296 (VFB296Q) /CSM/VF/VFB2-D/VFB296Q.Seq.d/                        509   e-143
SFJ894 (SFJ894Q) /CSM/SF/SFJ8-D/SFJ894Q.Seq.d/                        509   e-143
SFJ767 (SFJ767Q) /CSM/SF/SFJ7-C/SFJ767Q.Seq.d/                        509   e-143
CHB638 (CHB638Q) /CSM/CH/CHB6-B/CHB638Q.Seq.d/                        509   e-143
CFI751 (CFI751Q) /CSM/CF/CFI7-C/CFI751Q.Seq.d/                        509   e-143
CFC757 (CFC757Q) /CSM/CF/CFC7-C/CFC757Q.Seq.d/                        509   e-143
AFF409 (AFF409Q) /CSM/AF/AFF4-A/AFF409Q.Seq.d/                        509   e-143
SFD113 (SFD113Q) /CSM/SF/SFD1-A/SFD113Q.Seq.d/                        504   e-141
VFJ123 (VFJ123Q) /CSM/VF/VFJ1-A/VFJ123Q.Seq.d/                        502   e-141
own update 2003.12. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   280   e-168  11
BE643088|BE643088.1 Cri2_7_N07_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_7_N07 5', mRNA sequence.    48   6e-07  4
AB021850|AB021850.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate PEF-31.    34   0.055  2
AB021849|AB021849.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate TD-23.    34   0.055  2
D89044|D89044.1 Plasmodium falciparum (K1) DNA for serine repeat antigen, partial cds.    34   0.055  2
AB021838|AB021838.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate BL7-37.    34   0.055  2
AF526386|AF526386.1 Plasmodium falciparum isolate RNG-1 serine repeat antigen (SERA) gene, partial cds.    34   0.055  3
AB021846|AB021846.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate PEF-128.    34   0.055  2
AB021853|AB021853.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate LF-160.    34   0.055  2
AB021851|AB021851.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate MA-5.    34   0.055  2
dna update 2004. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JC9) RecName: Full=Uncharacterized protein DDB_G0271670; Fla...   112   2e-23
AY344225_2(AY344225|pid:none) Candida glabrata Epa5p (EPA5) and ...    38   0.73
AY344225_1(AY344225|pid:none) Candida glabrata Epa5p (EPA5) and ...    38   0.73
AY960620_1(AY960620|pid:none) Phragmatopoma californica cement p...    36   2.8
CR380953_171(CR380953|pid:none) Candida glabrata strain CBS138 c...    35   3.6
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    35   6.2
CR380953_96(CR380953|pid:none) Candida glabrata strain CBS138 ch...    35   6.2
protein update 2009. 4.20
PSORT 

 psg: 0.85  gvh: 0.66  alm: 0.16  top: 0.20  tms: 0.07  mit: 0.28  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for AFF409 is exc
5' end seq. ID AFF409F
5' end seq. 
>AFF409F.Seq
CTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACAC
AGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTC
AAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCC
AAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGA
TATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTC
ATTTTTAAATATTTTAGATACCAGCAGNTCTAGTTCAAGCTCAAGCAGNNCTAGTTCAAG
CAGTTCTAGTTCCAGCTCAAGCA----------
Length of 5' end seq. 383
3' end seq. ID AFF409Z
3' end seq. 
>AFF409Z.Seq
----------AGNTGNTNATCATCATCATCATCATCATCATCATCATCATCATGAAGNNG
CAAGATNATCATCATCANGAAGNTGAAGATNATNATCATCATGAAGNNGGAGNNGAAGAT
NATCATCATGAAGTNGAAGATGAAGATGATNATCATNAAGCNNANGNTNATNANGCAGCT
CATCATCATCATCATCANGNAGCNGAAGTTGATCATCATCANGATNTTNATCANGATNAA
GTAGNNGAAGNTGTTNATCANGATNAAGCAGCNGAAGNTGTTNATCANGNTGNAGTAGTN
GATNTNGTNGTNGNTGTTNATCANGATGAAGNTNCTCANGNNGAAGCAGTTGATNANGNT
NCTCANGNNNAAGCAGTTGATCANGNAGTNGNTNANGNTNCTCAAGNNNAAGCAGTNGAT
NANGNTNCTCANGCNGAAGCTGTTCATCANGNNGAAGNNGNAGNNGAAGCTNCTCATCAN
GNNNNAGCTNNTCATCANNNAGCNNATCATCATCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCATCAAGCTCAAGCAGCTCATCAAGTTCAAGCTCAAGCAGTT
CTAGCTCAAGCAGTTCTAGTTCAAGGGAGAAAACNAATTTAAAANATATAATAT
Length of 3' end seq. 764
Connected seq. ID AFF409P
Connected seq. 
>AFF409P.Seq
CTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACAC
AGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTC
AAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCC
AAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGA
TATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTC
ATTTTTAAATATTTTAGATACCAGCAGNTCTAGTTCAAGCTCAAGCAGNNCTAGTTCAAG
CAGTTCTAGTTCCAGCTCAAGCA----------AGNTGNTNATCATCATCATCATCATCA
TCATCATCATCATCATGAAGNNGCAAGATNATCATCATCANGAAGNTGAAGATNATNATC
ATCATGAAGNNGGAGNNGAAGATNATCATCATGAAGTNGAAGATGAAGATGATNATCATN
AAGCNNANGNTNATNANGCAGCTCATCATCATCATCATCANGNAGCNGAAGTTGATCATC
ATCANGATNTTNATCANGATNAAGTAGNNGAAGNTGTTNATCANGATNAAGCAGCNGAAG
NTGTTNATCANGNTGNAGTAGTNGATNTNGTNGTNGNTGTTNATCANGATGAAGNTNCTC
ANGNNGAAGCAGTTGATNANGNTNCTCANGNNNAAGCAGTTGATCANGNAGTNGNTNANG
NTNCTCAAGNNNAAGCAGTNGATNANGNTNCTCANGCNGAAGCTGTTCATCANGNNGAAG
NNGNAGNNGAAGCTNCTCATCANGNNNNAGCTNNTCATCANNNAGCNNATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGCTC
ATCAAGTTCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGGGAGAAAACNAA
TTTAAAANATATAATAT
Length of connected seq. 1147
Full length Seq ID -
Full length Seq. -
Length of full length seq. -