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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC182
Library CH
(Link to library)
Clone ID CHC182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC182 (CHC182Q) /CSM/CH/CHC1-D/CHC182Q.Seq.d/
XXXXXXXXXXAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTT
CACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAA
TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTG
AAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAAC
AAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATG
AAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAAC
AACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAAC
TTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAG
AGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAAT
TGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAAT
CTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAAC
AACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAA
AANAATTTAATCATTCTTTCTTTTTAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK
XFNHSFFLK
Translated Amino Acid sequence (All Frames) 
Frame A:
---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK
XFNHSFFLK


Frame B:
---qfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvk
ismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnn
nkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnw
lkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkikx
nliilsf*k


Frame C:
---ssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*r
yr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttt
trtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig
*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskx
i*sfflfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        678   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        678   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        678   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        678   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        678   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        678   0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        678   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        678   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        678   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        678   0.0
own update 2004. 5. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   678   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   1e-29  14
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   127   2e-25  1
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    34   7e-09  22
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   2e-08  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-07  20
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   1e-07  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-07  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-07  20
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   3e-07  14
dna update 2003.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   266   6e-70
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.37
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.8
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.9
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.2
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.2
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    33   7.0
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   7.0
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   9.2
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   9.2
protein update 2009. 5.17
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHC182 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC182Z
3' end seq. 
>CHC182Z.Seq
NNNNNNNNNNAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTT
CACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAA
TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTG
AAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAAC
AAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATG
AAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAAC
AACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAAC
TTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAG
AGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAAT
TGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAAT
CTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAAC
AACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAA
AANAATTTAATCATTCTTTCTTTTTAAAAA
Length of 3' end seq. 750
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -