CHC176
Library CH
(Link to library)
Clone ID CHC176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHC176 (CHC176Q) /CSM/CH/CHC1-D/CHC176Q.Seq.d/
XXXXXXXXXXTTGAAAAAGAAACCGNACTTGATATACCAATTCATGTCGATGCAGCAAGT
GGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGT
GTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGG
GTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTT
GGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGC
CAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGT
CTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTT
TATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTA
AAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCC
TATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTC
AGTCATGATAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---EKETXLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWV
VWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACL
DHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASY
TLPNLPDIVVQRVLIRHGFSHD


Translated Amino Acid sequence (All Frames)
Frame A:
---*krnrt*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlg
rmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrssssls
rswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancil
ystkltrycssksin*twfqs*y


Frame B:
---EKETXLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWV
VWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACL
DHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASY
TLPNLPDIVVQRVLIRHGFSHD


Frame C:
---kkkpxliyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelags
ygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*
imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpi
lyqtyqil*fkey*ldmvsvmi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/ 1185 0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/ 1185 0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/ 1185 0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/ 1185 0.0
CHE432 (CHE432Q) /CSM/CH/CHE4-B/CHE432Q.Seq.d/ 1185 0.0
CHC176 (CHC176Q) /CSM/CH/CHC1-D/CHC176Q.Seq.d/ 1185 0.0
CFJ215 (CFJ215Q) /CSM/CF/CFJ2-A/CFJ215Q.Seq.d/ 1185 0.0
CFE515 (CFE515Q) /CSM/CF/CFE5-A/CFE515Q.Seq.d/ 1185 0.0
CFC847 (CFC847Q) /CSM/CF/CFC8-B/CFC847Q.Seq.d/ 1185 0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/ 1183 0.0

own update 2002. 9.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence. 66 8e-10 2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence. 70 6e-09 2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds. 58 2e-07 2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence. 50 2e-07 2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence. 64 4e-07 2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence. 64 4e-07 2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence. 64 4e-07 2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence. 64 5e-07 2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence. 64 5e-07 2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence. 66 6e-07 1
dna update 2003.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 299 3e-80
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 296 3e-79
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 292 4e-78
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 291 9e-78
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 288 8e-77
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 283 3e-75
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 273 2e-72
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 273 3e-72
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 270 2e-71
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t... 267 1e-70
protein update 2009. 5.17
PSORT

psg: 0.75 gvh: 0.40 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CHC176 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC176Z
3' end seq.
>CHC176Z.Seq
NNNNNNNNNNTTGAAAAAGAAACCGNACTTGATATACCAATTCATGTCGATGCAGCAAGT
GGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGT
GTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGG
GTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTT
GGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGC
CAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGT
CTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTT
TATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTA
AAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCC
TATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTC
AGTCATGATAT
Length of 3' end seq. 611
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -