NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC138
Library CH
(Link to library)
Clone ID CHC138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC138 (CHC138Q) /CSM/CH/CHC1-B/CHC138Q.Seq.d/
XXXXXXXXXXAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGAC
CAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGG
TGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGC
TGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATCACCAATGATAAAGGTCGTCT
TTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGA
ACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAA
AAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTAT
TGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGA
TGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACT
CTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTC
ACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAA
CATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTGCT
CATATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---QPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAE
DKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKN
SIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLY
QEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*slli
Translated Amino Acid sequence (All Frames) 
Frame A:
---inqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myql
kinqlvtnkrlqspmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllk
iqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vns
ikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkacs
y


Frame B:
---strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*
r*inw*qtkdynhq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*k
fn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tl
srrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklah
i


Frame C:
---QPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAE
DKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKN
SIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLY
QEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*slli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC138 (CHC138Q) /CSM/CH/CHC1-B/CHC138Q.Seq.d/                       1419   0.0
VHI336 (VHI336Q) /CSM/VH/VHI3-B/VHI336Q.Seq.d/                       1411   0.0
AFO615 (AFO615Q) /CSM/AF/AFO6-A/AFO615Q.Seq.d/                       1411   0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                       1405   0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/                       1405   0.0
VHO655 (VHO655Q) /CSM/VH/VHO6-C/VHO655Q.Seq.d/                       1405   0.0
VHO461 (VHO461Q) /CSM/VH/VHO4-C/VHO461Q.Seq.d/                       1405   0.0
VHK415 (VHK415Q) /CSM/VH/VHK4-A/VHK415Q.Seq.d/                       1405   0.0
VHE322 (VHE322Q) /CSM/VH/VHE3-A/VHE322Q.Seq.d/                       1405   0.0
VHD618 (VHD618Q) /CSM/VH/VHD6-A/VHD618Q.Seq.d/                       1405   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1394   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1386   0.0    1
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    96   1e-44  4
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    96   1e-44  4
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.   129   2e-41  2
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 129   2e-41  2
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          129   2e-41  2
CB097437|CB097437.1 ku40f06.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.   176   3e-40  1
BI773123|BI773123.1 kq45c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   3e-39  3
BI772941|BI772941.1 kq08c08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   3e-39  3
dna update 2003.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   350   3e-95
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   350   3e-95
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   255   1e-66
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   254   1e-66
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   254   2e-66
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   253   3e-66
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   253   4e-66
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   253   4e-66
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...   253   4e-66
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   253   5e-66
protein update 2009. 5.17
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHC138 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC138Z
3' end seq. 
>CHC138Z.Seq
NNNNNNNNNNAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGAC
CAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGG
TGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGC
TGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATCACCAATGATAAAGGTCGTCT
TTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGA
ACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAA
AAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTAT
TGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGA
TGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACT
CTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTC
ACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAA
CATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTGCT
CATATA
Length of 3' end seq. 726
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -