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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC122
Library CH
(Link to library)
Clone ID CHC122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13855-1
Original site URL
Representative seq. ID CHC122P
(Link to Original site)
Representative DNA sequence 
>CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGGGNCATAATTCATCAAGCAAAACANCCNCANCAAGANCAXXXXXXXXXXGGAGAA
TCAACCAAATTGGGTGAACCAATTTCAATTGAGTCTGCAAAAGATCATATCTTTGGTTTG
GTACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGT
CCATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCA
TTGCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAA
GAACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATG
TCAAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAA
CAATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACT
GGTACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAA
GGTAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGAT
GGTGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGT
AATTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAAATTAATTAAATA
AATAAATAAATAAAGAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
KIFLFCMIKLFIIFSFFFLFFRXIIHQAKXPXQX---

---GESTKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWV
VTMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMY
WTLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEER
KFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*ikk
Translated Amino Acid sequence (All Frames) 
Frame A:
KIFLFCMIKLFIIFSFFFLFFRXIIHQAKXPXQX---

---GESTKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWV
VTMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMY
WTLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEER
KFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*ikk

Frame B:
kffyfa**scslffhfffyflgx*fikqnxxxkx---

---enqpnwvnqfqlslqkiislvwyf*migvqeiskngntfhwvhswqrisaqlyhhgl
lqwrhcnhllqnhqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlqi*ntci
ghslnnwliil*mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vlkqmkke
nsfkmvillsylvfvkvmviklvlvivkvqfyqlinvnkkklik*ink*rk

Frame C:
nffilhdkavhyffifffif*ghnsssktxxxrx---

---rinqig*tnfn*vckrsylwfgtfe*leckrypkmgirsigsilgkefrlnyitmgc
ynggiaticykttnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfkfeihvl
dthstigssyckwl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*nk*rkk
ihsrw*fcyliwsl*r*wlsnwfw*l*rynfts**tsikkn*lnk*inken
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/                       1287   0.0
SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/                       1275   0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/                       1275   0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/                       1275   0.0
AFE706 (AFE706Q) /CSM/AF/AFE7-A/AFE706Q.Seq.d/                       1275   0.0
VFL795 (VFL795Q) /CSM/VF/VFL7-D/VFL795Q.Seq.d/                       1273   0.0
SFD588 (SFD588Q) /CSM/SF/SFD5-D/SFD588Q.Seq.d/                       1273   0.0
CHD530 (CHD530Q) /CSM/CH/CHD5-B/CHD530Q.Seq.d/                       1271   0.0
CFJ568 (CFJ568Q) /CSM/CF/CFJ5-C/CFJ568Q.Seq.d/                       1271   0.0
SFB270 (SFB270Q) /CSM/SF/SFB2-C/SFB270Q.Seq.d/                       1269   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CN853326|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase. Score = 257 bits (656), Expect = 2e-67, mRNA sequence.    84   4e-12  1
BI504681|BI504681.1 BB170011A20F01.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence.    64   6e-08  2
CF446374|CF446374.1 EST682719 normalized cDNA library of onion Allium cepa cDNA clone ACAHY76, mRNA sequence.    64   4e-06  1
BM774584|BM774584.1 ra95c11.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence.    64   4e-06  1
CF440839|CF440839.1 EST677184 normalized cDNA library of onion Allium cepa cDNA clone ACAFM72, mRNA sequence.    64   4e-06  1
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read.    50   5e-06  3
CB377955|CB377955.1 rq05b07.y1 Heterodera glycines J3 Heterodera glycines cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence.    62   1e-05  1
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read.    48   2e-05  3
AV888124|AV888124.1 Ciona intestinalis cDNA, clone:rcicl27h05, 3' end, single read.    48   2e-05  3
BP018255|BP018255.1 Ciona intestinalis cDNA, clone:ciad79b21, 5' end, single read.    48   2e-05  3
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   445   e-124
(A5PKH3) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   283   4e-75
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c...   283   6e-75
(P16930) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   283   6e-75
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr...   279   8e-74
BC044366_1(BC044366|pid:none) Danio rerio fumarylacetoacetate hy...   278   2e-73
BC165458_1(BC165458|pid:none) Danio rerio fumarylacetoacetate hy...   278   2e-73
CP000521_3734(CP000521|pid:none) Acinetobacter baumannii ATCC 17...   275   9e-73
CP000159_2302(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   275   9e-73
CU468230_3428(CU468230|pid:none) Acinetobacter baumannii str. SD...   274   2e-72
protein update 2009. 3.29
PSORT 

 psg: 1.02  gvh: 0.48  alm: 0.19  top: 0.43  tms: 0.07  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for CHC122 is end
5' end seq. ID CHC122F
5' end seq. 
>CHC122F.Seq
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGGGNCATAATTCATCAAGCAAAACANCCNCANCAAGANCANNNNNNNNNN
Length of 5' end seq. 114
3' end seq. ID CHC122Z
3' end seq. 
>CHC122Z.Seq
NNNNNNNNNNGGAGAATCAACCAAATTGGGTGAACCAATTTCAATTGAGTCTGCAAAAGA
TCATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGA
ATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGT
TGTTACAATGGAGGCATTGCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACC
AATGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTAT
TAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTA
TTGGACACTCACTCAACAATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGG
TGATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTT
GGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAG
AAAATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTA
TCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAA
AAAAATTAATTAAATAAATAAATAAATAAAGAAAAC
Length of 3' end seq. 696
Connected seq. ID CHC122P
Connected seq. 
>CHC122P.Seq
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGGGNCATAATTCATCAAGCAAAACANCCNCANCAAGANCA----------GGAGAA
TCAACCAAATTGGGTGAACCAATTTCAATTGAGTCTGCAAAAGATCATATCTTTGGTTTG
GTACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGT
CCATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCA
TTGCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAA
GAACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATG
TCAAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAA
CAATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACT
GGTACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAA
GGTAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGAT
GGTGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGT
AATTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAAATTAATTAAATA
AATAAATAAATAAAGAAAAC
Length of connected seq. 790
Full length Seq ID -
Full length Seq. -
Length of full length seq. -