AFF396
Library AF
(Link to library)
Clone ID AFF396
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12898-1
Original site URL
Representative seq. ID AFF396F
(Link to Original site)
Representative DNA sequence
>AFF396 (AFF396Q) /CSM/AF/AFF3-D/AFF396Q.Seq.d/
AACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATG
GTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAG
GAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCAC
CAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAG
TTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATT
TTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCA
TTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGT
TGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAA
CCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCCXXXXXXXXXX
sequence update 2001. 6. 2
Translated Amino Acid sequence
QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPP
VMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGI
KKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSL
SHFL---


Translated Amino Acid sequence (All Frames)
Frame A:
nkflq*vlqliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikvh
ql*mnkkdikqyvhvngqmklqkvhlil*lkniwiv*tvifvymvkifqlvqmvkmfmka
lkrvvnldssnvlkvfqqpswlvvcyyapktifkmfqvskphhwevsiqtfytnnhhtqv
yhis---


Frame B:
tsfyneyyn**kan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*rst
sye*trki*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*rh
*kew*i*ihqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitihkf
itfp---


Frame C:
QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPP
VMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGI
KKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSL
SHFL---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/ 1100 0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/ 1100 0.0
VFG581 (VFG581Q) /CSM/VF/VFG5-D/VFG581Q.Seq.d/ 1100 0.0
VFF663 (VFF663Q) /CSM/VF/VFF6-C/VFF663Q.Seq.d/ 1100 0.0
VFF530 (VFF530Q) /CSM/VF/VFF5-B/VFF530Q.Seq.d/ 1100 0.0
VFE361 (VFE361Q) /CSM/VF/VFE3-C/VFE361Q.Seq.d/ 1100 0.0
VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/ 1100 0.0
AFF396 (AFF396Q) /CSM/AF/AFF3-D/AFF396Q.Seq.d/ 1100 0.0
AFF388 (AFF388Q) /CSM/AF/AFF3-D/AFF388Q.Seq.d/ 1100 0.0
VFM413 (VFM413Q) /CSM/VF/VFM4-A/VFM413Q.Seq.d/ 1092 0.0

own update 2001.12. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clonecLPP17G1 5' sequence, mRNA sequence. 92 7e-17 3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence. 92 1e-16 3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence. 92 2e-15 2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence. 92 2e-15 2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence. 92 2e-15 2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence. 92 2e-15 2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence. 92 2e-15 2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence. 92 2e-15 2
BG601025|BG601025.1 EST505920 cSTS Solanum tuberosum cDNA clone cSTS30D8 5' sequence, mRNA sequence. 90 9e-15 2
BG133537|BG133537.1 EST466525 tomato crown gall Lycopersicon esculentum cDNA clone cTOE13N15 5' sequence, mRNA sequence. 92 1e-14 1
dna update 2004. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 373 e-102
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23... 203 3e-51
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052... 203 3e-51
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 201 1e-50
AL663030_11(AL663030|pid:none) Mouse DNA sequence from clone RP2... 198 7e-50
AY189524_1(AY189524|pid:none) Mus musculus CTP:ethanolaminephosp... 197 2e-49
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid... 196 4e-49
AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos... 192 4e-48
AC087079_11(AC087079|pid:none) Caenorhabditis elegans cosmid Y37... 189 3e-47
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32. 186 3e-46
protein update 2009. 4.20
PSORT

psg: 0.52 gvh: 0.53 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFF396 is cyt

5' end seq. ID AFF396F
5' end seq.
>AFF396F.Seq
AACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATG
GTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAG
GAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCAC
CAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAG
TTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATT
TTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCA
TTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGT
TGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAA
CCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCC----------
Length of 5' end seq. 555
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -