CHB894 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHB894
Library	CH (Link to library)
Clone ID	CHB894 (Link to dictyBase)
Atlas ID	-
NBRP ID	G22872
dictyBase ID	DDB0218088
Link to Contig	Contig-U11106-1\|Contig-U12934-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHB8-D/CHB894Q.Seq.d/
Representative seq. ID	CHB894P (Link to Original site)
Representative DNA sequence	>CHB894 (CHB894Q) /CSM/CH/CHB8-D/CHB894Q.Seq.d/ AAGTGATCCATCATGCAAAGACAACTATATGGTCGATATCGATGGCGACAATGGTATCTT ACAATTGCAACCAAATGAAAAGGTATTCCAAATCGAGTGGCAATCAGATCCAAAATCATC TCAACACATTTGTGCTATCCTCACCAATCAAAGAATTATCATAACAAATTCACGTCTTAG AATTATAAATCAAATTCATTCACCACCAAATCATCATCAATCAACTTCTTCCTATTTTCA AAGTATCTTTTGGTTAGAATGGACATTACTCTATACAACATCAACCCATTTAATGTATAT GACCTTACAAAATAATCAAGCACCAAAGCCAATCTCAACTCTATCAATTTCACCAATTAT CTTATCAACTATCTTACCTGATCGTATGATTTTCGGTTACCAAGGTTTACAAGTACCTGG AAAGAATGAAACCACCGTTCGTTGTCAAGCCATTGGTATTTTAGAATGTTTAATCATTGG TTTACTCTCTTTACCACCTTTTATTCAATATGAAAAGAAATATTTAAGTAGTTGXXXXXX XXXXCAAAATAAATCAATCAATAAAGTCAATCCACCAGTTGTAAAGATTTTACCATGGGA TCCAACAGCCACAACCAATGTTAGTATGAAATCGGGTTTGGATTATCTCTCCCCAATCAA TTTAAATTCAATTCAAAGATATTATCCAATCTCTTTACCATTTAGTGGTGCAAGTGCCTC TTTGAATGGTGGAAAACATAAACTATTACGTCCTCCTGAAGAAAGCTGGCCACCTGAAGA TTTTAAACATTCCGTTGCAATCACTCCTCCTCGTACTCTAATGTCTTTGGTTGCCAATCG TTTATCAACTAAATCCCATATGTCTTCAACTACAACATTACGTCGTTCACCCTCAATTGA AAATATTAGAACTACCTCTACCACTTTTGACTCTTCAAAATTCAATACCGATAATCAAGA GCTATTCGATGATGACTCTGATGATGACTCTGACTCTGGTGCTGATGCCGATGTCGATAG TGAAAATGAAGAAGATAGAAAATTGGTTATGACTGTTCCTGCCTCACTACAGCATAATGA TAATTCTTCTCTAACAAATATCACCGTAACTGATAATGATTCAAATTTAGATCAAGATAT AACCTCAAATACTGGTTCTGATATTGCNATTTAAATGATACTCAATTATCTTCAACTCCA ACTCCAACTACAACCTT
sequence update	2002.10.25
Translated Amino Acid sequence	SDPSCKDNYMVDIDGDNGILQLQPNEKVFQIEWQSDPKSSQHICAILTNQRIIITNSRLR IINQIHSPPNHHQSTSSYFQSIFWLEWTLLYTTSTHLMYMTLQNNQAPKPISTLSISPII LSTILPDRMIFGYQGLQVPGKNETTVRCQAIGILECLIIGLLSLPPFIQYEKKYLSS--- ---QNKSINKVNPPVVKILPWDPTATTNVSMKSGLDYLSPINLNSIQRYYPISLPFSGAS ASLNGGKHKLLRPPEESWPPEDFKHSVAITPPRTLMSLVANRLSTKSHMSSTTTLRRSPS IENIRTTSTTFDSSKFNTDNQELFDDDSDDDSDSGADADVDSENEEDRKLVMTVPASLQH NDNSSLTNITVTDNDSNLDQDITSNTGSDIAI*milnylqlqlqlqp
Translated Amino Acid sequence (All Frames)	Frame A: ksimqrqlygryrwrqwyltiatkkgipnrvairskiisthlcyphqsknyhnkfts* nyksnsfttksssinfflfskyllvrmditlyninpfnvydltksstkanlnsinftny linyltsydfrlprftstwkenhrslsshwyfrmfnhwftlfttfysikeifkl-- - ---QNKSINKVNPPVVKILPWDPTATTNVSMKSGLDYLSPINLNSIQRYYPISLPFSGAS ASLNGGKHKLLRPPEESWPPEDFKHSVAITPPRTLMSLVANRLSTKSHMSSTTTLRRSPS IENIRTTSTTFDSSKFNTDNQELFDDDSDDDSDSGADADVDSENEEDRKLVMTVPASLQH NDNSSLTNITVTDNDSNLDQDITSNTGSDIAImilnylqlqlqlqp Frame B: SDPSCKDNYMVDIDGDNGILQLQPNEKVFQIEWQSDPKSSQHICAILTNQRIIITNSRLR IINQIHSPPNHHQSTSSYFQSIFWLEWTLLYTTSTHLMYMTLQNNQAPKPISTLSISPII LSTILPDRMIFGYQGLQVPGKNETTVRCQAIGILECLIIGLLSLPPFIQYEKKYLSS--- ---kinqsiksihqlrfyhgiqqpqpmlvnrvwiispqsiiqfkdiiqslyhlvvqv plmveninyyvllkkaghlkilniplqslllvlclwlpivyqlnpiclqlqhyvvhpq lkilelplplltlqnsipiiksysmmtlmmtltlvlmpmsivkmkkienwllflphysi miillqisplimiqiikipqilvlilxfkysiifnsnsnynl Frame C: vihhakttiwsismatmvsyncnqmkryskssgnqiqnhlntfvlsspikelsqihvle likfihhqiiinqllpifkvsfgnghysiqhqpicipykiikhqsqsqlyqfhqls yqlsylivfsvtkvykylermkppfvvkplvfnvslvyslyhllfnmkrnivv--- ---kinqsqstsckdftmgsnshnqcyeigfglslpnqfkfnskilsnlftiwckc lfewwkttitssrklatrftfrcnhsssysnvfgcqsfinipyvfnynitsftln kynylyhflfkiqyrsrairl*llwccrcrkrrkigydcscltta ffsnkyhrnfkfrsrynlkywfycxlndtqlsstptpttt
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHB894 (CHB894Q) /CSM/CH/CHB8-D/CHB894Q.Seq.d/ 2347 0.0 AHQ260 (AHQ260Q) /CSM/AH/AHQ2-C/AHQ260Q.Seq.d/ 1314 0.0 AHA289 (AHA289Q) /CSM/AH/AHA2-D/AHA289Q.Seq.d/ 1314 0.0 SHL185 (SHL185Q) /CSM/SH/SHL1-D/SHL185Q.Seq.d/ 1308 0.0 AHD693 (AHD693Q) /CSM/AH/AHD6-D/AHD693Q.Seq.d/ 1298 0.0 VHC250 (VHC250Q) /CSM/VH/VHC2-C/VHC250Q.Seq.d/ 1253 0.0 AHI604 (AHI604Q) /CSM/AH/AHI6-A/AHI604Q.Seq.d/ 1205 0.0 AHO116 (AHO116Q) /CSM/AH/AHO1-A/AHO116Q.Seq.d/ 46 0.001 AHM830 (AHM830Q) /CSM/AH/AHM8-B/AHM830Q.Seq.d/ 46 0.001 AHH391 (AHH391Q) /CSM/AH/AHH3-D/AHH391Q.Seq.d/ 46 0.001
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 0.008 15 CB494437\|CB494437.1 omykrbhb006068 Oncorhynchus mykiss Tzenaicut Lake whole Oncorhynchus mykiss cDNA, mRNA sequence. 52 0.022 1 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 32 0.052 12 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 0.083 10 BB012141\|BB012141.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930407K15, 3' end partial sequence, similar to ddbj:U21673 Mus musculus t complex testis-specific protein (Tctex2) mRNA, wild type. 50 0.086 1 CR382131\|CR382131.1 Yarrowia lipolytica chromosome E of strain CLIB99 of Yarrowia lipolytica. 50 0.086 1 AZ681196\|AZ681196.1 ENTIN39TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.24 2 AZ536289\|AZ536289.1 ENTCB22TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.24 2 BX679660\|BX679660.3 Zebrafish DNA sequence * SEQUENCING CANCELLED * from clone. 40 0.27 9 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 30 0.30 16
dna update	2004. 9.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value BT069037_1(BT069037\|pid:none) Zea mays full-length cDNA clone ZM... 43 0.025 AP008218_563(AP008218\|pid:none) Oryza sativa (japonica cultivar-... 37 1.8 AL844508_224(AL844508\|pid:none) Plasmodium falciparum strain 3D7... 35 6.7
protein update	2009. 3.29
PSORT	psg: 0.75 gvh: 0.33 alm: 0.28 top: 0.73 tms: 0.07 mit: 0.28 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 52.0 %: nuclear 28.0 %: cytoplasmic 8.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for CHB894 is nuc
5' end seq. ID	CHB894F
5' end seq.	>CHB894F.Seq AAGTGATCCATCATGCAAAGACAACTATATGGTCGATATCGATGGCGACAATGGTATCTT ACAATTGCAACCAAATGAAAAGGTATTCCAAATCGAGTGGCAATCAGATCCAAAATCATC TCAACACATTTGTGCTATCCTCACCAATCAAAGAATTATCATAACAAATTCACGTCTTAG AATTATAAATCAAATTCATTCACCACCAAATCATCATCAATCAACTTCTTCCTATTTTCA AAGTATCTTTTGGTTAGAATGGACATTACTCTATACAACATCAACCCATTTAATGTATAT GACCTTACAAAATAATCAAGCACCAAAGCCAATCTCAACTCTATCAATTTCACCAATTAT CTTATCAACTATCTTACCTGATCGTATGATTTTCGGTTACCAAGGTTTACAAGTACCTGG AAAGAATGAAACCACCGTTCGTTGTCAAGCCATTGGTATTTTAGAATGTTTAATCATTGG TTTACTCTCTTTACCACCTTTTATTCAATATGAAAAGAAATATTTAAGTAGTTGNNNNNN NNNN
Length of 5' end seq.	544
3' end seq. ID	CHB894Z
3' end seq.	>CHB894Z.Seq NNNNNNNNNNCAAAATAAATCAATCAATAAAGTCAATCCACCAGTTGTAAAGATTTTACC ATGGGATCCAACAGCCACAACCAATGTTAGTATGAAATCGGGTTTGGATTATCTCTCCCC AATCAATTTAAATTCAATTCAAAGATATTATCCAATCTCTTTACCATTTAGTGGTGCAAG TGCCTCTTTGAATGGTGGAAAACATAAACTATTACGTCCTCCTGAAGAAAGCTGGCCACC TGAAGATTTTAAACATTCCGTTGCAATCACTCCTCCTCGTACTCTAATGTCTTTGGTTGC CAATCGTTTATCAACTAAATCCCATATGTCTTCAACTACAACATTACGTCGTTCACCCTC AATTGAAAATATTAGAACTACCTCTACCACTTTTGACTCTTCAAAATTCAATACCGATAA TCAAGAGCTATTCGATGATGACTCTGATGATGACTCTGACTCTGGTGCTGATGCCGATGT CGATAGTGAAAATGAAGAAGATAGAAAATTGGTTATGACTGTTCCTGCCTCACTACAGCA TAATGATAATTCTTCTCTAACAAATATCACCGTAACTGATAATGATTCAAATTTAGATCA AGATATAACCTCAAATACTGGTTCTGATATTGCNATTTAAATGATACTCAATTATCTTCA ACTCCAACTCCAACTACAACCTT
Length of 3' end seq.	683
Connected seq. ID	CHB894P
Connected seq.	>CHB894P.Seq AAGTGATCCATCATGCAAAGACAACTATATGGTCGATATCGATGGCGACAATGGTATCTT ACAATTGCAACCAAATGAAAAGGTATTCCAAATCGAGTGGCAATCAGATCCAAAATCATC TCAACACATTTGTGCTATCCTCACCAATCAAAGAATTATCATAACAAATTCACGTCTTAG AATTATAAATCAAATTCATTCACCACCAAATCATCATCAATCAACTTCTTCCTATTTTCA AAGTATCTTTTGGTTAGAATGGACATTACTCTATACAACATCAACCCATTTAATGTATAT GACCTTACAAAATAATCAAGCACCAAAGCCAATCTCAACTCTATCAATTTCACCAATTAT CTTATCAACTATCTTACCTGATCGTATGATTTTCGGTTACCAAGGTTTACAAGTACCTGG AAAGAATGAAACCACCGTTCGTTGTCAAGCCATTGGTATTTTAGAATGTTTAATCATTGG TTTACTCTCTTTACCACCTTTTATTCAATATGAAAAGAAATATTTAAGTAGTTG------ ----CAAAATAAATCAATCAATAAAGTCAATCCACCAGTTGTAAAGATTTTACCATGGGA TCCAACAGCCACAACCAATGTTAGTATGAAATCGGGTTTGGATTATCTCTCCCCAATCAA TTTAAATTCAATTCAAAGATATTATCCAATCTCTTTACCATTTAGTGGTGCAAGTGCCTC TTTGAATGGTGGAAAACATAAACTATTACGTCCTCCTGAAGAAAGCTGGCCACCTGAAGA TTTTAAACATTCCGTTGCAATCACTCCTCCTCGTACTCTAATGTCTTTGGTTGCCAATCG TTTATCAACTAAATCCCATATGTCTTCAACTACAACATTACGTCGTTCACCCTCAATTGA AAATATTAGAACTACCTCTACCACTTTTGACTCTTCAAAATTCAATACCGATAATCAAGA GCTATTCGATGATGACTCTGATGATGACTCTGACTCTGGTGCTGATGCCGATGTCGATAG TGAAAATGAAGAAGATAGAAAATTGGTTATGACTGTTCCTGCCTCACTACAGCATAATGA TAATTCTTCTCTAACAAATATCACCGTAACTGATAATGATTCAAATTTAGATCAAGATAT AACCTCAAATACTGGTTCTGATATTGCNATTTAAATGATACTCAATTATCTTCAACTCCA ACTCCAACTACAACCTT
Length of connected seq.	1207
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas