NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF389
Library AF
(Link to library)
Clone ID AFF389
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFF389Z
(Link to Original site)
Representative DNA sequence 
>AFF389 (AFF389Q) /CSM/AF/AFF3-D/AFF389Q.Seq.d/
XXXXXXXXXXAANCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGG
NGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATC
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---PEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMI
Translated Amino Acid sequence (All Frames) 
Frame A:
---xqntlktmnstslmisxlsvsnygklnlvpslti*


Frame B:
---xrir*rq*tlpl**srxyrfrimas*iwfhl*qyd


Frame C:
---PEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM276 (VFM276Q) /CSM/VF/VFM2-D/VFM276Q.Seq.d/                        202   8e-52
VFM129 (VFM129Q) /CSM/VF/VFM1-B/VFM129Q.Seq.d/                        202   8e-52
VFL360 (VFL360Q) /CSM/VF/VFL3-C/VFL360Q.Seq.d/                        202   8e-52
VFL283 (VFL283Q) /CSM/VF/VFL2-D/VFL283Q.Seq.d/                        202   8e-52
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/                        202   8e-52
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/                        202   8e-52
VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/                        202   8e-52
VFK516 (VFK516Q) /CSM/VF/VFK5-A/VFK516Q.Seq.d/                        202   8e-52
VFJ261 (VFJ261Q) /CSM/VF/VFJ2-C/VFJ261Q.Seq.d/                        202   8e-52
VFJ164 (VFJ164Q) /CSM/VF/VFJ1-C/VFJ164Q.Seq.d/                        202   8e-52
own update 2001.11.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.   202   7e-49  1
AC021001|AC021001.5 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence.    42   1.5    1
AP000427|AP000427.3 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1171G1.    42   1.5    1
AC111867|AC111867.4 Rattus norvegicus clone CH230-215N4, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   5.9    1
AL157902|AL157902.6 Human DNA sequence from clone RP4-675C20 on chromosome 1p13.2.  Contains the 3' end of the MAN1A2 gene for mannosidase alpha 1A2, a  pseudogene similar to predicted fly, worm and yeast genes, ESTs,  STSs and GSSs.    40   5.9    1
AC114457|AC114457.4 Rattus norvegicus clone CH230-253P5, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   5.9    1
AQ379387|AQ379387.1 RPCI11-163O4.TV RPCI-11 Homo sapiens genomic clone RPCI-11-163O4, genomic survey sequence.    40   5.9    1
BQ540867|BQ540867.1 ps73f05.y1 Trichinella spiralis adult pAMP1 v1 Trichinella spiralis cDNA 5' similar to SW:CRTC_CAEEL P27798 CALRETICULIN PRECURSOR. [1] ;, mRNA sequence.    40   5.9    1
AC022671|AC022671.3 Homo sapiens chromosome 4 clone RP11-113M8 map 4, WORKING DRAFT SEQUENCE, 18 unordered pieces.    40   5.9    1
AG153556|AG153556.1 Pan troglodytes DNA, clone: RP43-017E22.TJ.    40   5.9    1
dna update 2004. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...    77   2e-13
AY510702_1(AY510702|pid:none) Haemonchus contortus calreticulin-...    59   7e-08
(Q61KR9) RecName: Full=Calreticulin; Flags: Precursor;                 57   2e-07
AF052978_1(AF052978|pid:none) Dirofilaria immitis calreticulin p...    56   3e-07
A48573(A48573)calreticulin autoantigen homolog precursor - fluke...    55   7e-07
A32507(A32507;A28813)41K larval antigen - nematode (Onchocerca v...    55   7e-07
L24159_1(L24159|pid:none) Schistosoma mansoni calreticulin gene,...    55   7e-07
(Q06814) RecName: Full=Calreticulin; AltName: Full=SM4 protein; ...    55   7e-07
(P11012) RecName: Full=Calreticulin; AltName: Full=RAL1 antigen;...    55   7e-07
(P27798) RecName: Full=Calreticulin; Flags: Precursor;  &AF12596...    55   9e-07
protein update 2009. 4.20
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for AFF389 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF389Z
3' end seq. 
>AFF389Z.Seq
----------AANCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGG
NGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATC
Length of 3' end seq. 108
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -