>CHB832 (CHB832Q) /CSM/CH/CHB8-B/CHB832Q.Seq.d/
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCAAAATCTCTTCCTTGAGAXXXXXXXXXXTTGGAAA
ACTATCAAGAGTATCACNCAGTATTACGTGAGAATATGAATGCTGAACATCAATTGGCAA
AGAGTCAATTGGAACATTCTCATCTCAGTGAAACCAATCATCTCAAAGAGAGACAAGTTA
CAGAGACCGAACAACATATCAAACAAATGACANCCGAACAAAGAAACTCTCTAAAAGAGT
TTAAATTGAAACAAACTCAAGACTTTAAAGAGTTTCTCAATAAACTAAAGAAAGAGTTGA
AAGATGAAAAAGGCAATAAGAAGCAATTACAACAACAACATAAAGAACAAAAGAAACAAT
TCGAATTGACTCTCTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGTCAAAAAG
AGGAGGAGGATGATATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTTCAAGATA
AACAACAAAATATCATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAACAATTTG
AAACAGAATACACTTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAAAAGAAAG
CCCTATTAAAACAACAACACTCTGAACAGAAACAAATCTATCAAGAACAAACTCAACTTC
AATATCGTTTACTTCAAGAGCAACACAAAGAATCACCAGCTCTTTTAACGGATCAACATT
TGAAACAAAAAGAATCCATTGAGGAACAACAAAAAGAGAGATTAACTCTTCAACAAGAGG
AACATCGATTCAACAAGAATCACTC

KTTAAASASASSLNLSTGNLQQSLSGSGSITTNSGVGNGTSGKPTTNGKSSDDRSPDIRT
NRKAGRPVTIRKTLEKRNDAVKKIVNAKLMKQQLKDIKKHQQKQQQKQKEHEFKDQNKVL
DKSTPKKLSKHIAIHQKVIREQEICVQDLVFQQKQDFQKLVDDHQNATQNLFLE---

---LENYQEYHXVLRENMNAEHQLAKSQLEHSHLSETNHLKERQVTETEQHIKQMTXEQR
NSLKEFKLKQTQDFKEFLNKLKKELKDEKGNKKQLQQQHKEQKKQFELTLSTQEVDFQKK
QARQKEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYTFNEEEMLIEH
YRQKKALLKQQHSEQKQIYQEQTQLQYRLLQEQHKESPALLTDQHLKQKESIEEQQKERL
TLQQEEHRFNKNH

Frame A:
KTTAAASASASSLNLSTGNLQQSLSGSGSITTNSGVGNGTSGKPTTNGKSSDDRSPDIRT
NRKAGRPVTIRKTLEKRNDAVKKIVNAKLMKQQLKDIKKHQQKQQQKQKEHEFKDQNKVL
DKSTPKKLSKHIAIHQKVIREQEICVQDLVFQQKQDFQKLVDDHQNATQNLFLE---

---LENYQEYHXVLRENMNAEHQLAKSQLEHSHLSETNHLKERQVTETEQHIKQMTXEQR
NSLKEFKLKQTQDFKEFLNKLKKELKDEKGNKKQLQQQHKEQKKQFELTLSTQEVDFQKK
QARQKEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYTFNEEEMLIEH
YRQKKALLKQQHSEQKQIYQEQTQLQYRLLQEQHKESPALLTDQHLKQKESIEEQQKERL
TLQQEEHRFNKNH

Frame B:
kqqqqhqhqhhhli*vqviynnhylvvvqlqpivvlvmvlvvnqqpmvnlvmidhqisep
iekqvdqlqlekhwkremmqlkrlsmln**nnn*ki*rninknnnknkrntnlrikiryl
inphqrn*vntlqsikrsleskrfayriwfsnrnktfkswsmtikmqpkisslr---

---wktiksitqyyvri*mlninwqrvnwnilisvkpiiskrdklqrpnnisnk*xpnke
tl*ksln*nklktlksfsin*rks*kmkkairsnynnniknkrnnsn*lsphkr*iskrn
khvkkrrrmisyslikrnhlkdfkinnkisfvilrnivnykdnnlkqntlstrrrc*sni
idkrkpy*nnntlnrnksiknklnfnivyfksntknhqlf*rini*nkknplrnnkkrd*
lfnkrnidstrit

Frame C:
nnsssisisiit*fkyr*fttiiiw*wfnynq*wcw*wy*w*tnnqw*i****itryqnq
*ksr*tsyn*knigkek*cs*kdcqc*idettieryketstktttktkgtri*gsk*gt*
*ihtkeie*thcnpskgh*rardlrtgfgfptetrlskvgr*pskcnpkslp*---

---gklsrvsxsit*eyec*tsigkesigtfssq*nqssqretsyrdrttyqtndxrtkk
lskrv*ietnsrl*rvsq*tkerver*krq*eaitttt*rtketiridslhtrgrfpket
stskrggg*ylthsskgii*ktsr*ttkyhs*y*gtl*ttktti*nrihfqrggdvdrtl
*tkespiktttl*tetnlsrtnstsisftsratqritssfngstfetkrih*gttkrein
sstrgtsiqqesl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB832 (CHB832Q) /CSM/CH/CHB8-B/CHB832Q.Seq.d/                       1830   0.0
CHB732 (CHB732Q) /CSM/CH/CHB7-B/CHB732Q.Seq.d/                       1433   0.0
CHH174 (CHH174Q) /CSM/CH/CHH1-D/CHH174Q.Seq.d/                       1068   0.0
CHL265 (CHL265Q) /CSM/CH/CHL2-C/CHL265Q.Seq.d/                        521   e-147
CHM822 (CHM822Q) /CSM/CH/CHM8-A/CHM822Q.Seq.d/                        513   e-144
CFF114 (CFF114Q) /CSM/CF/CFF1-A/CFF114Q.Seq.d/                        513   e-144
AFE457 (AFE457Q) /CSM/AF/AFE4-C/AFE457Q.Seq.d/                        513   e-144
SLI338 (SLI338Q) /CSM/SL/SLI3-B/SLI338Q.Seq.d/                        436   e-121
AHO191 (AHO191Q) /CSM/AH/AHO1-D/AHO191Q.Seq.d/                        174   2e-42
VHM375 (VHM375Q) /CSM/VH/VHM3-D/VHM375Q.Seq.d/                         46   0.001

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC009983|AC009983.1 Drosophila melanogaster chromosome 3 clone BACR28O03 (D1096)PROGRESS ***, 83 unordered pieces.    46   4e-06  6
AC018042|AC018042.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    48   3e-04  2
AU050068|AU050068.1 Paralichthys olivaceus leukocyte cDNA, clone WG4-8.    58   4e-04  1
CB918603|CB918603.1 VVD035E11_347839 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD035E11 5, mRNA sequence.    58   4e-04  1
AY357120|AY357120.1 Streptococcus pyogenes plasmid pSM19035, complete sequence.    32   9e-04  9
AC142467|AC142467.2 Rattus norvegicus clone CH230-41G22, WORKING DRAFT SEQUENCE, 65 unordered pieces.    56   0.001  1
BQ867633|BQ867633.1 QGD11G20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD11G20, mRNA sequence.    56   0.001  1
U93026|U93026.1 Drosophila dasycnemia hunchback protein gene, partial cds.    56   0.001  1
AV779187|AV779187.1 Lotus corniculatus var. japonicus cDNA clone:MPDL053e01_f, 3' end.    56   0.001  1
U92998|U92998.1 Drosophila adunca hunchback protein gene, partial cds.    56   0.001  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_3(AC115598|pid:none) Dictyostelium discoideum chromosom...    49   3e-04
AK290550_1(AK290550|pid:none) Homo sapiens cDNA FLJ77065 partial...    48   6e-04
AB209693_1(AB209693|pid:none) Homo sapiens mRNA for golgi autoan...    48   6e-04
AF273047_1(AF273047|pid:none) Homo sapiens CTCL tumor antigen se...    48   6e-04
U31906_1(U31906|pid:none) Homo sapiens golgin-245 mRNA, complete...    48   6e-04
CP001019_1716(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    48   8e-04
CP001080_1627(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    48   8e-04
(Q54Y06) RecName: Full=Probable cyclin-dependent serine/threonin...    48   8e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    48   8e-04
BC134170_1(BC134170|pid:none) Danio rerio zgc:162964, mRNA (cDNA...    47   0.001

 psg: 0.86  gvh: 0.52  alm: 0.53  top: 0.40  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHB832 is cyt

>CHB832F.Seq
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCAAAATCTCTTCCTTGAGANNNNNNNNNN

>CHB832Z.Seq
NNNNNNNNNNTTGGAAAACTATCAAGAGTATCACNCAGTATTACGTGAGAATATGAATGC
TGAACATCAATTGGCAAAGAGTCAATTGGAACATTCTCATCTCAGTGAAACCAATCATCT
CAAAGAGAGACAAGTTACAGAGACCGAACAACATATCAAACAAATGACANCCGAACAAAG
AAACTCTCTAAAAGAGTTTAAATTGAAACAAACTCAAGACTTTAAAGAGTTTCTCAATAA
ACTAAAGAAAGAGTTGAAAGATGAAAAAGGCAATAAGAAGCAATTACAACAACAACATAA
AGAACAAAAGAAACAATTCGAATTGACTCTCTCCACACAAGAGGTAGATTTCCAAAAGAA
ACAAGCACGTCAAAAAGAGGAGGAGGATGATATCTTACTCACTCATCAAAAGGAATCATT
TAAAAGACTTCAAGATAAACAACAAAATATCATTCGTGATATTGAGGAACATTGTAAACT
ACAAAGACAACAATTTGAAACAGAATACACTTTCAACGAGGAGGAGATGTTGATCGAACA
TTATAGACAAAAGAAAGCCCTATTAAAACAACAACACTCTGAACAGAAACAAATCTATCA
AGAACAAACTCAACTTCAATATCGTTTACTTCAAGAGCAACACAAAGAATCACCAGCTCT
TTTAACGGATCAACATTTGAAACAAAAAGAATCCATTGAGGAACAACAAAAAGAGAGATT
AACTCTTCAACAAGAGGAACATCGATTCAACAAGAATCACTC

>CHB832P.Seq
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCAAAATCTCTTCCTTGAGA----------TTGGAAA
ACTATCAAGAGTATCACNCAGTATTACGTGAGAATATGAATGCTGAACATCAATTGGCAA
AGAGTCAATTGGAACATTCTCATCTCAGTGAAACCAATCATCTCAAAGAGAGACAAGTTA
CAGAGACCGAACAACATATCAAACAAATGACANCCGAACAAAGAAACTCTCTAAAAGAGT
TTAAATTGAAACAAACTCAAGACTTTAAAGAGTTTCTCAATAAACTAAAGAAAGAGTTGA
AAGATGAAAAAGGCAATAAGAAGCAATTACAACAACAACATAAAGAACAAAAGAAACAAT
TCGAATTGACTCTCTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGTCAAAAAG
AGGAGGAGGATGATATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTTCAAGATA
AACAACAAAATATCATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAACAATTTG
AAACAGAATACACTTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAAAAGAAAG
CCCTATTAAAACAACAACACTCTGAACAGAAACAAATCTATCAAGAACAAACTCAACTTC
AATATCGTTTACTTCAAGAGCAACACAAAGAATCACCAGCTCTTTTAACGGATCAACATT
TGAAACAAAAAGAATCCATTGAGGAACAACAAAAAGAGAGATTAACTCTTCAACAAGAGG
AACATCGATTCAACAAGAATCACTC