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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB831
Library CH
(Link to library)
Clone ID CHB831
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHB831P
(Link to Original site)
Representative DNA sequence 
>CHB831 (CHB831Q) /CSM/CH/CHB8-B/CHB831Q.Seq.d/
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTXXXXXXXXXXCNCAAANAG
CTGGCAACGGNGCACGTAATTNTGNTAATNAAGGTTACAATTCCGTNAAANATGGTGCNC
AAAAAGCTGGCAACGGNGCACGTAATTATGNTCAACAAGGTTATCAAGCATGGANANAAG
GNGTCAATGAGATTGGTGATGANATCGCCAATACTGCACATNATGTAGGTGATGGTTTNG
CCAATACTGCACGTNAAGTAGGTGATGGAATTANAATCNCTGCANAGGAGGGATATGAAC
TCATTAAANATGGAGCTGAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTA
AAATTAAAAAAGCCCNACAAAGAATGGCTGAACAANAAGAAANAANAAGGTTNATGCAAN
AANAAAGTGAAANAAGACGATTGCAAANAAACAGAGAAAGNCNAGAGCCNATTAGAACTT
ANACNACTGCNCAANAAGCNCAACGATANANACCCNAACCTGGGAACTTTGCNCGTAAAA
NAGGNGCAAGAAATTNAAAAAAGAAAAAATAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
IQFNFINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTA---

---QXAGNGARNXXNXGYNSVKXGAQKAGNGARNYXQQGYQAWXXGVNEIGDXIANTAHX
VGDGXANTARXVGDGIXIXAXEGYELIKXGAEXTWVXKY*rlslikikkaxqrmaeqxex
xrxmqxxsexrrlqxnrexxepirtxttaqxaqrxxpxpgnfarkxgarnxkkkk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
iynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghviv
sltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetm
limislcvicvsqhwmimvtvtk*hplnklsftnsklnsthgitsvlihsmil---

---xkxlatxhvixxxkvtipxxmvxkklatxhvimxnkvikhgxkxsmrlvmxspilhx
m*vmvxpilhvk*vmelxslxrrdmnslxmelxklgxxnikgyp*lklkkpxkewlnxkk
xxgxcxxkvkxddckxtekxxsxlelxxlxxkxndxxpnlgtlxvkxxqeixkrknkn

Frame B:
yti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**c
h*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc
***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*prf*stv*yc---

---xxswqrxt*xx*xrlqfrxxwcxkswqrxt*lxstrlssmxxrxq*dw**xrqyctx
cr*wfxqyctxsr*wnxnxcxggi*th*xws*xnlgxxilkviln*n*ksptkng*txrx
xkvxaxxk*xktiaxkqrkxrax*nlxxcxxsxtixtxtwelcx*xrxkkxkkekik

Frame C:
IQFNFINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTA---

---QXAGNGARNXXNXGYNSVKXGAQKAGNGARNYXQQGYQAWXXGVNEIGDXIANTAHX
VGDGXANTARXVGDGIXIXAXEGYELIKXGAEXTWVXKY*rlslikikkaxqrmaeqxex
xrxmqxxsexrrlqxnrexxepirtxttaqxaqrxxpxpgnfarkxgarnxkkkk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB831 (CHB831Q) /CSM/CH/CHB8-B/CHB831Q.Seq.d/                       1411   0.0
SFK243 (SFK243Q) /CSM/SF/SFK2-B/SFK243Q.Seq.d/                       1033   0.0
SFH254 (SFH254Q) /CSM/SF/SFH2-C/SFH254Q.Seq.d/                       1033   0.0
SFF729 (SFF729Q) /CSM/SF/SFF7-B/SFF729Q.Seq.d/                       1033   0.0
SFF606 (SFF606Q) /CSM/SF/SFF6-A/SFF606Q.Seq.d/                       1033   0.0
SFF507 (SFF507Q) /CSM/SF/SFF5-A/SFF507Q.Seq.d/                       1033   0.0
SFE345 (SFE345Q) /CSM/SF/SFE3-B/SFE345Q.Seq.d/                       1033   0.0
SFB315 (SFB315Q) /CSM/SF/SFB3-A/SFB315Q.Seq.d/                       1033   0.0
CHR880 (CHR880Q) /CSM/CH/CHR8-D/CHR880Q.Seq.d/                       1033   0.0
CHP572 (CHP572Q) /CSM/CH/CHP5-C/CHP572Q.Seq.d/                       1033   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.   133   6e-28  5
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    92   2e-14  1
AW076871|AW076871.1 fj03a01.y1 Zebrafish adult olfactory Danio rerio cDNA 5', mRNA sequence.    50   0.074  1
CR383683|CR383683.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   0.074  1
BH689643|BH689643.1 BOMDR69TF BO_2_3_KB Brassica oleracea genomic clone BOMDR69, DNA sequence.    50   0.074  1
AY352678|AY352678.1 Lutzomyia migonei isolate 1 12S ribosomal RNA gene, partial sequence; mitochondrial.    50   0.074  1
BH530565|BH530565.1 BOGJR47TF BOGJ Brassica oleracea genomic clone BOGJR47, DNA sequence.    50   0.074  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   0.18   8
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    36   0.21   8
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    34   0.31   7
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    87   9e-16
AC117081_63(AC117081|pid:none) Dictyostelium discoideum chromoso...    59   4e-07
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    39   0.38
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    35   4.1
AL844509_656(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.4
protein update 2008.10.24
PSORT 

 psg: 0.87  gvh: 0.62  alm: 0.22  top: 0.30  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for CHB831 is end
5' end seq. ID CHB831F
5' end seq. 
>CHB831F.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTNNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID CHB831Z
3' end seq. 
>CHB831Z.Seq
NNNNNNNNNNCNCAAANAGCTGGCAACGGNGCACGTAATTNTGNTAATNAAGGTTACAAT
TCCGTNAAANATGGTGCNCAAAAAGCTGGCAACGGNGCACGTAATTATGNTCAACAAGGT
TATCAAGCATGGANANAAGGNGTCAATGAGATTGGTGATGANATCGCCAATACTGCACAT
NATGTAGGTGATGGTTTNGCCAATACTGCACGTNAAGTAGGTGATGGAATTANAATCNCT
GCANAGGAGGGATATGAACTCATTAAANATGGAGCTGAANAAACTTGGGTNAANAAATAT
TAAAGGTTATCCTTAATTAAAATTAAAAAAGCCCNACAAAGAATGGCTGAACAANAAGAA
ANAANAAGGTTNATGCAANAANAAAGTGAAANAAGACGATTGCAAANAAACAGAGAAAGN
CNAGAGCCNATTAGAACTTANACNACTGCNCAANAAGCNCAACGATANANACCCNAACCT
GGGAACTTTGCNCGTAAAANAGGNGCAAGAAATTNAAAAAAGAAAAAATAAAAAT
Length of 3' end seq. 535
Connected seq. ID CHB831P
Connected seq. 
>CHB831P.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCT----------CNCAAANAG
CTGGCAACGGNGCACGTAATTNTGNTAATNAAGGTTACAATTCCGTNAAANATGGTGCNC
AAAAAGCTGGCAACGGNGCACGTAATTATGNTCAACAAGGTTATCAAGCATGGANANAAG
GNGTCAATGAGATTGGTGATGANATCGCCAATACTGCACATNATGTAGGTGATGGTTTNG
CCAATACTGCACGTNAAGTAGGTGATGGAATTANAATCNCTGCANAGGAGGGATATGAAC
TCATTAAANATGGAGCTGAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTA
AAATTAAAAAAGCCCNACAAAGAATGGCTGAACAANAAGAAANAANAAGGTTNATGCAAN
AANAAAGTGAAANAAGACGATTGCAAANAAACAGAGAAAGNCNAGAGCCNATTAGAACTT
ANACNACTGCNCAANAAGCNCAACGATANANACCCNAACCTGGGAACTTTGCNCGTAAAA
NAGGNGCAAGAAATTNAAAAAAGAAAAAATAAAAAT
Length of connected seq. 1046
Full length Seq ID -
Full length Seq. -
Length of full length seq. -