CHB732
Library CH
(Link to library)
Clone ID CHB732
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16535-1
Original site URL
Representative seq. ID CHB732P
(Link to Original site)
Representative DNA sequence
>CHB732 (CHB732Q) /CSM/CH/CHB7-B/CHB732Q.Seq.d/
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCAXXXXXXXXXXATCAAGAGTATCACNCAGTATTAC
GTGAGAATATGAATGCTGAACATCAATTGGCAAAGAGTCAATTGGAACATTCTCATCTCA
GTGAAACCAATCATCTCAAAGAGAGACAAGTTACAGAGACCGAACAACATATCAAACAAA
TGACAACCGAACAAAGAAACTCTCTAAAAGAGTTTAAATTGAAACAAACTCAAGACTTTA
AAGAGTTTCTCAATAAACTAAAGAAAGAGTTGAAAGATGAAAAAGGCAATAAGAAGCAAT
TACAACAACAACATAAAGAACAAAAGAAACAATTCGAATTGACTCTCTCCACACAAGAGG
TAGATTTCCAAAAGAAACAAGCACGTCAAAAAGAGGAGGAGGATGATATCTTACTCACTC
ATCAAAAGGAATCATTTAAAAGACTTCAAGATAAACAACAAAATATCATTCGTGATATTG
AGGAACATTGTAAACTACAAAGACAACAATTTGAAACAGAATACACTTTCAACGAGGAGG
AGATGTTGATCGAACATTATAGACAAAAGAAAGCCCTATTAAAACAACAACACTCTGAAC
AGAAACAAATCTATCAAGAACAAACTCAACTTCAATATCGTTTACTTCAAGAGCAACACA
AAGAATCACCAGCTCTTTTAACTGATCAACATTTGAAACAAAAAGAATCCATTGAGGAAC
AACAAAAAGAGAGATTAACTCTTCAACAAGAGGAACATCGTATTCAACAAGAATCAC
sequence update 2002.10.25
Translated Amino Acid sequence
KTTAAASASASSLNLSTGNLQQSLSGSGSITTNSGVGNGTSGKPTTNGKSSDDRSPDIRT
NRKAGRPVTIRKTLEKRNDAVKKIVNAKLMKQQLKDIKKHQQKQQQKQKEHEFKDQNKVL
DKSTPKKLSKHIAIHQKVIREQEICVQDLVFQQKQDFQKLVDDHQNAT---

---QEYHXVLRENMNAEHQLAKSQLEHSHLSETNHLKERQVTETEQHIKQMTTEQRNSLK
EFKLKQTQDFKEFLNKLKKELKDEKGNKKQLQQQHKEQKKQFELTLSTQEVDFQKKQARQ
KEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYTFNEEEMLIEHYRQK
KALLKQQHSEQKQIYQEQTQLQYRLLQEQHKESPALLTDQHLKQKESIEEQQKERLTLQQ
EEHRIQQES


Translated Amino Acid sequence (All Frames)
Frame A:
KTTAAASASASSLNLSTGNLQQSLSGSGSITTNSGVGNGTSGKPTTNGKSSDDRSPDIRT
NRKAGRPVTIRKTLEKRNDAVKKIVNAKLMKQQLKDIKKHQQKQQQKQKEHEFKDQNKVL
DKSTPKKLSKHIAIHQKVIREQEICVQDLVFQQKQDFQKLVDDHQNAT---

---iksitqyyvri*mlninwqrvnwnilisvkpiiskrdklqrpnnisnk*qpnketl*
ksln*nklktlksfsin*rks*kmkkairsnynnniknkrnnsn*lsphkr*iskrnkhv
kkrrrmisyslikrnhlkdfkinnkisfvilrnivnykdnnlkqntlstrrrc*sniidk
rkpy*nnntlnrnksiknklnfnivyfksntknhqlf*lini*nkknplrnnkkrd*lfn
krnivfnknh

Frame B:
kqqqqhqhqhhhli*vqviynnhylvvvqlqpivvlvmvlvvnqqpmvnlvmidhqisep
iekqvdqlqlekhwkremmqlkrlsmln**nnn*ki*rninknnnknkrntnlrikiryl
inphqrn*vntlqsikrsleskrfayriwfsnrnktfkswsmtikmqp---

---srvsxsit*eyec*tsigkesigtfssq*nqssqretsyrdrttyqtndnrtkklsk
rv*ietnsrl*rvsq*tkerver*krq*eaitttt*rtketiridslhtrgrfpketsts
krggg*ylthsskgii*ktsr*ttkyhs*y*gtl*ttktti*nrihfqrggdvdrtl*tk
espiktttl*tetnlsrtnstsisftsratqritssfn*stfetkrih*gttkreinsst
rgtsystri

Frame C:
nnsssisisiit*fkyr*fttiiiw*wfnynq*wcw*wy*w*tnnqw*i****itryqnq
*ksr*tsyn*knigkek*cs*kdcqc*idettieryketstktttktkgtri*gsk*gt*
*ihtkeie*thcnpskgh*rardlrtgfgfptetrlskvgr*pskcnp---

---QEYHXVLRENMNAEHQLAKSQLEHSHLSETNHLKERQVTETEQHIKQMTTEQRNSLK
EFKLKQTQDFKEFLNKLKKELKDEKGNKKQLQQQHKEQKKQFELTLSTQEVDFQKKQARQ
KEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYTFNEEEMLIEHYRQK
KALLKQQHSEQKQIYQEQTQLQYRLLQEQHKESPALLTDQHLKQKESIEEQQKERLTLQQ
EEHRIQQES

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHB732 (CHB732Q) /CSM/CH/CHB7-B/CHB732Q.Seq.d/ 1780 0.0
CHB832 (CHB832Q) /CSM/CH/CHB8-B/CHB832Q.Seq.d/ 1433 0.0
CHH174 (CHH174Q) /CSM/CH/CHH1-D/CHH174Q.Seq.d/ 1082 0.0
CHM822 (CHM822Q) /CSM/CH/CHM8-A/CHM822Q.Seq.d/ 513 e-144
CFF114 (CFF114Q) /CSM/CF/CFF1-A/CFF114Q.Seq.d/ 513 e-144
AFE457 (AFE457Q) /CSM/AF/AFE4-C/AFE457Q.Seq.d/ 513 e-144
CHL265 (CHL265Q) /CSM/CH/CHL2-C/CHL265Q.Seq.d/ 507 e-142
SLI338 (SLI338Q) /CSM/SL/SLI3-B/SLI338Q.Seq.d/ 436 e-121
AHO191 (AHO191Q) /CSM/AH/AHO1-D/AHO191Q.Seq.d/ 188 1e-46
VHM375 (VHM375Q) /CSM/VH/VHM3-D/VHM375Q.Seq.d/ 46 0.001

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009983|AC009983.1 Drosophila melanogaster chromosome 3 clone BACR28O03 (D1096)PROGRESS ***, 83 unordered pieces. 46 3e-06 6
AC018042|AC018042.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 48 3e-04 2
AU050068|AU050068.1 Paralichthys olivaceus leukocyte cDNA, clone WG4-8. 58 4e-04 1
CB918603|CB918603.1 VVD035E11_347839 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD035E11 5, mRNA sequence. 58 4e-04 1
U93026|U93026.1 Drosophila dasycnemia hunchback protein gene, partial cds. 56 0.001 1
AV779187|AV779187.1 Lotus corniculatus var. japonicus cDNA clone:MPDL053e01_f, 3' end. 56 0.001 1
U92998|U92998.1 Drosophila adunca hunchback protein gene, partial cds. 56 0.001 1
AC142467|AC142467.2 Rattus norvegicus clone CH230-41G22, WORKING DRAFT SEQUENCE, 65 unordered pieces. 56 0.001 1
BQ867633|BQ867633.1 QGD11G20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD11G20, mRNA sequence. 56 0.001 1
AC134130|AC134130.3 Rattus norvegicus clone CH230-42A5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 56 0.001 8
dna update 2004. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK290550_1(AK290550|pid:none) Homo sapiens cDNA FLJ77065 partial... 50 1e-04
AB209693_1(AB209693|pid:none) Homo sapiens mRNA for golgi autoan... 50 1e-04
AF273047_1(AF273047|pid:none) Homo sapiens CTCL tumor antigen se... 50 1e-04
U31906_1(U31906|pid:none) Homo sapiens golgin-245 mRNA, complete... 50 1e-04
CP001019_1716(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co... 48 8e-04
CP001080_1627(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 48 8e-04
(Q54Y06) RecName: Full=Probable cyclin-dependent serine/threonin... 48 8e-04
AC115598_3(AC115598|pid:none) Dictyostelium discoideum chromosom... 48 8e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 48 8e-04
BC134170_1(BC134170|pid:none) Danio rerio zgc:162964, mRNA (cDNA... 47 0.001
protein update 2009. 3.29
PSORT

psg: 0.86 gvh: 0.52 alm: 0.53 top: 0.40 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHB732 is nuc

5' end seq. ID CHB732F
5' end seq.
>CHB732F.Seq
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCANNNNNNNNNN
Length of 5' end seq. 516
3' end seq. ID CHB732Z
3' end seq.
>CHB732Z.Seq
NNNNNNNNNNATCAAGAGTATCACNCAGTATTACGTGAGAATATGAATGCTGAACATCAA
TTGGCAAAGAGTCAATTGGAACATTCTCATCTCAGTGAAACCAATCATCTCAAAGAGAGA
CAAGTTACAGAGACCGAACAACATATCAAACAAATGACAACCGAACAAAGAAACTCTCTA
AAAGAGTTTAAATTGAAACAAACTCAAGACTTTAAAGAGTTTCTCAATAAACTAAAGAAA
GAGTTGAAAGATGAAAAAGGCAATAAGAAGCAATTACAACAACAACATAAAGAACAAAAG
AAACAATTCGAATTGACTCTCTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGT
CAAAAAGAGGAGGAGGATGATATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTT
CAAGATAAACAACAAAATATCATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAA
CAATTTGAAACAGAATACACTTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAA
AAGAAAGCCCTATTAAAACAACAACACTCTGAACAGAAACAAATCTATCAAGAACAAACT
CAACTTCAATATCGTTTACTTCAAGAGCAACACAAAGAATCACCAGCTCTTTTAACTGAT
CAACATTTGAAACAAAAAGAATCCATTGAGGAACAACAAAAAGAGAGATTAACTCTTCAA
CAAGAGGAACATCGTATTCAACAAGAATCAC
Length of 3' end seq. 751
Connected seq. ID CHB732P
Connected seq.
>CHB732P.Seq
AAAACAACAGCAGCAGCATCAGCATCAGCATCATCACTTAATTTAAGTACAGGTAATTTA
CAACAATCATTATCTGGTAGTGGTTCAATTACAACCAATAGTGGTGTTGGTAATGGTACT
AGTGGTAAACCAACAACCAATGGTAAATCTAGTGATGATAGATCACCAGATATCAGAACC
AATAGAAAAGCAGGTAGACCAGTTACAATTAGAAAAACATTGGAAAAGAGAAATGATGCA
GTTAAAAAGATTGTCAATGCTAAATTGATGAAACAACAATTGAAAGATATAAAGAAACAT
CAACAAAAACAACAACAAAAACAAAAGGAACACGAATTTAAGGATCAAAATAAGGTACTT
GATAAATCCACACCAAAGAAATTGAGTAAACACATTGCAATCCATCAAAAGGTCATTAGA
GAGCAAGAGATTTGCGTACAGGATTTGGTTTTCCAACAGAAACAAGACTTTCAAAAGTTG
GTCGATGACCATCAAAATGCAACCCA----------ATCAAGAGTATCACNCAGTATTAC
GTGAGAATATGAATGCTGAACATCAATTGGCAAAGAGTCAATTGGAACATTCTCATCTCA
GTGAAACCAATCATCTCAAAGAGAGACAAGTTACAGAGACCGAACAACATATCAAACAAA
TGACAACCGAACAAAGAAACTCTCTAAAAGAGTTTAAATTGAAACAAACTCAAGACTTTA
AAGAGTTTCTCAATAAACTAAAGAAAGAGTTGAAAGATGAAAAAGGCAATAAGAAGCAAT
TACAACAACAACATAAAGAACAAAAGAAACAATTCGAATTGACTCTCTCCACACAAGAGG
TAGATTTCCAAAAGAAACAAGCACGTCAAAAAGAGGAGGAGGATGATATCTTACTCACTC
ATCAAAAGGAATCATTTAAAAGACTTCAAGATAAACAACAAAATATCATTCGTGATATTG
AGGAACATTGTAAACTACAAAGACAACAATTTGAAACAGAATACACTTTCAACGAGGAGG
AGATGTTGATCGAACATTATAGACAAAAGAAAGCCCTATTAAAACAACAACACTCTGAAC
AGAAACAAATCTATCAAGAACAAACTCAACTTCAATATCGTTTACTTCAAGAGCAACACA
AAGAATCACCAGCTCTTTTAACTGATCAACATTTGAAACAAAAAGAATCCATTGAGGAAC
AACAAAAAGAGAGATTAACTCTTCAACAAGAGGAACATCGTATTCAACAAGAATCAC
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -