>CHB660 (CHB660Q) /CSM/CH/CHB6-C/CHB660Q.Seq.d/
TGGCCTACTGGNAAAAATCATACACACACCAAAATATAAAATATATACTTAAAAAGATGA
TTTCAAACCTTTCAAAAGTTTTAAACTCAAATGTAAAGAGAATGTATACTACAGCAAAAA
ACCTTGAATCAGTTGTAATTGTTTCAGCAGTTAGAACACCAATTGGTTCAATTGGTGGTT
CATTATCAACAATACCAGGTACAAAATTATCATCAATAACAATTGAAGAAGCAGTAAAGA
GAGCAGGTATTAAACCATCAGATGTTGATGAAGCAATCATTGGTAATGTAATTTCAGCCA
ATTTAGGACAAGCACCAGCACGTCAATGTGCATTGGGAGCTGGTTTAGAACAAAAAACCA
TCACAACCACCATCAATAAAGTATGTTCATCAGGTATGAAAGCAATTGTATTTGGCGCAC
AATCAATCGCATTGGGTCACAGCAAAACTGTGGTTGCAGGTGGTTTCGAATCAATGTCAC
AAGTGCCATACTATGCCGATAAAATGAGATTCGGTGCAAAGTATGGCAACCAAACATTCA
TCGATGGTTXXXXXXXXXXATTCCCGACNGCNCCNGCTCGCGCCATGCCNAAGGCNCNTA
AAAANGCAGGGAGCANNATGTCACAAGTTGATCTCTTTGNAATCAATGAAGCCTTGGCTG
TTGTTGGTCCCGCNNANGCAAAGATCTTAGANATCGATCATAATAAACTCAATGTTAATG
GTGGTGCCGTTGCATTAGGTCANCCAATTGGTTCATCAGGTTGTCGGANTGTTGTCACTC
TTACTCATTTACTTCTTTAATAAAAATCTT

AYWXKSYTHQNIKYILKKMISNLSKVLNSNVKRMYTTAKNLESVVIVSAVRTPIGSIGGS
LSTIPGTKLSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGAGLEQKTI
TTTINKVCSSGMKAIVFGAQSIALGHSKTVVAGGFESMSQVPYYADKMRFGAKYGNQTFI
DG---

---FPTAPARAMPKAXKXAGSXMSQVDLFXINEALAVVGPAXAKILXIDHNKLNVNGGAV
ALGXPIGSSGCRXVVTLTHLLL**ks

Frame A:
wptgknhthtki*niylkr*fqtfqkf*tqm*recilqqktlnql*lfqqlehqlvqlvv
hyqqyqvqnyhq*qlkkq*reqvlnhqmlmkqslvm*fqpi*dkhqhvnvhwelv*nkkp
sqppsikyvhqv*kqlylahnqshwvtaklwlqvvsnqchkchtmpik*dsvqsmatkhs
smv---

---ipdxxxsrhaxgx*kxrexxvts*slxnq*slgccwsrxxkdlrxrs**tqc*wwcr
cirsxnwfirlsxcchsysftsliki

Frame B:
gllxkiihtpkykiyt*kddfkpfksfklkckenvyyskkp*iscncfss*ntnwfnwwf
iinntrykiiinnn*rsskesry*tirc**snhw*cnfsqfrtststsmcigswfrtknh
hnhhq*smfiryesnciwrtinrigsqqncgcrwfrinvtsailcr*neirckvwqpnih
rw---

---FPTAPARAMPKAXKXAGSXMSQVDLFXINEALAVVGPAXAKILXIDHNKLNVNGGAV
ALGXPIGSSGCRXVVTLTHLLL**ks

Frame C:
AYWXKSYTHQNIKYILKKMISNLSKVLNSNVKRMYTTAKNLESVVIVSAVRTPIGSIGGS
LSTIPGTKLSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGAGLEQKTI
TTTINKVCSSGMKAIVFGAQSIALGHSKTVVAGGFESMSQVPYYADKMRFGAKYGNQTFI
DG---

---srxxxlapcxrxxkxqgaxchklislxsmkpwlllvpxxqrs*xsiiinsmlmvvpl
h*vxqlvhqvvgxlsllliyffnknl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB660 (CHB660Q) /CSM/CH/CHB6-C/CHB660Q.Seq.d/                       1445   0.0
VFC301 (VFC301Q) /CSM/VF/VFC3-A/VFC301Q.Seq.d/                       1068   0.0
VFO653 (VFO653Q) /CSM/VF/VFO6-C/VFO653Q.Seq.d/                       1065   0.0
VFN815 (VFN815Q) /CSM/VF/VFN8-A/VFN815Q.Seq.d/                       1065   0.0
VFM844 (VFM844Q) /CSM/VF/VFM8-B/VFM844Q.Seq.d/                       1065   0.0
SFA101 (SFA101Q) /CSM/SF/SFA1-A/SFA101Q.Seq.d/                       1065   0.0
CHA249 (CHA249Q) /CSM/CH/CHA2-C/CHA249Q.Seq.d/                       1065   0.0
CFF714 (CFF714Q) /CSM/CF/CFF7-A/CFF714Q.Seq.d/                       1065   0.0
AFG237 (AFG237Q) /CSM/AF/AFG2-B/AFG237Q.Seq.d/                       1065   0.0
VFH459 (VFH459Q) /CSM/VF/VFH4-C/VFH459Q.Seq.d/                       1059   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   906   0.0    9
CO408267|CO408267.1 VRK454T7 Vitis riparia bud - VRK Vitis riparia cDNA clone VRK454 5', mRNA sequence.    48   0.010  2
CO408265|CO408265.1 VRK453T7 Vitis riparia bud - VRK Vitis riparia cDNA clone VRK453 5', mRNA sequence.    48   0.010  2
CO408263|CO408263.1 VRK452T7 Vitis riparia bud - VRK Vitis riparia cDNA clone VRK452 5', mRNA sequence.    48   0.010  2
CB971300|CB971300.1 CAB10005_IIIa_Fa_H08 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10005_IIIa_Fa_H08 5', mRNA sequence.    48   0.010  2
CB975981|CB975981.1 CAB40001_IIa_Fa_F09 Cabernet Sauvignon Berry - CAB4 Vitis vinifera cDNA clone CAB40001_IIa_Fa_F09 5', mRNA sequence.    48   0.012  2
CF511327|CF511327.1 CAbud0002_IIF_B12 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0002_IIF_B12 5', mRNA sequence.    48   0.014  2
AC096795|AC096795.6 Rattus norvegicus clone CH230-75I14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    52   0.014  1
AC118328|AC118328.5 Rattus norvegicus clone CH230-325D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    52   0.014  1
AC027460|AC027460.3 Homo sapiens clone RP11-519A11, WORKING DRAFT SEQUENCE, 36 unordered pieces.    50   0.057  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86AD9) RecName: Full=Probable acetyl-CoA acetyltransferase;   ...   316   6e-85
D89184_1(D89184|pid:none) Schizosaccharomyces pombe mRNA, partia...   187   3e-46
AP007174_12(AP007174|pid:none) Aspergillus oryzae RIB40 genomic ...   169   9e-41
BT071305_1(BT071305|pid:none) Picea sitchensis clone WS02822_K16...   161   3e-38
BT042208_1(BT042208|pid:none) Zea mays full-length cDNA clone ZM...   159   1e-37
FB905633_1(FB905633|pid:none) Sequence 124906 from Patent WO2008...   159   1e-37
(Q8S4Y1) RecName: Full=Acetyl-CoA acetyltransferase, cytosolic 1...   157   3e-37
DQ347964_1(DQ347964|pid:none) Picrorhiza kurrooa acetoacetyl-CoA...   157   3e-37
BT051902_1(BT051902|pid:none) Medicago truncatula clone MTYF5_F6...   157   4e-37
BT071698_1(BT071698|pid:none) Picea sitchensis clone WS0299_O20 ...   156   6e-37

 psg: 0.58  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHB660 is mit

>CHB660F.Seq
TGGCCTACTGGNAAAAATCATACACACACCAAAATATAAAATATATACTTAAAAAGATGA
TTTCAAACCTTTCAAAAGTTTTAAACTCAAATGTAAAGAGAATGTATACTACAGCAAAAA
ACCTTGAATCAGTTGTAATTGTTTCAGCAGTTAGAACACCAATTGGTTCAATTGGTGGTT
CATTATCAACAATACCAGGTACAAAATTATCATCAATAACAATTGAAGAAGCAGTAAAGA
GAGCAGGTATTAAACCATCAGATGTTGATGAAGCAATCATTGGTAATGTAATTTCAGCCA
ATTTAGGACAAGCACCAGCACGTCAATGTGCATTGGGAGCTGGTTTAGAACAAAAAACCA
TCACAACCACCATCAATAAAGTATGTTCATCAGGTATGAAAGCAATTGTATTTGGCGCAC
AATCAATCGCATTGGGTCACAGCAAAACTGTGGTTGCAGGTGGTTTCGAATCAATGTCAC
AAGTGCCATACTATGCCGATAAAATGAGATTCGGTGCAAAGTATGGCAACCAAACATTCA
TCGATGGTTNNNNNNNNNN

>CHB660Z.Seq
NNNNNNNNNNATTCCCGACNGCNCCNGCTCGCGCCATGCCNAAGGCNCNTAAAAANGCAG
GGAGCANNATGTCACAAGTTGATCTCTTTGNAATCAATGAAGCCTTGGCTGTTGTTGGTC
CCGCNNANGCAAAGATCTTAGANATCGATCATAATAAACTCAATGTTAATGGTGGTGCCG
TTGCATTAGGTCANCCAATTGGTTCATCAGGTTGTCGGANTGTTGTCACTCTTACTCATT
TACTTCTTTAATAAAAATCTT

>CHB660P.Seq
TGGCCTACTGGNAAAAATCATACACACACCAAAATATAAAATATATACTTAAAAAGATGA
TTTCAAACCTTTCAAAAGTTTTAAACTCAAATGTAAAGAGAATGTATACTACAGCAAAAA
ACCTTGAATCAGTTGTAATTGTTTCAGCAGTTAGAACACCAATTGGTTCAATTGGTGGTT
CATTATCAACAATACCAGGTACAAAATTATCATCAATAACAATTGAAGAAGCAGTAAAGA
GAGCAGGTATTAAACCATCAGATGTTGATGAAGCAATCATTGGTAATGTAATTTCAGCCA
ATTTAGGACAAGCACCAGCACGTCAATGTGCATTGGGAGCTGGTTTAGAACAAAAAACCA
TCACAACCACCATCAATAAAGTATGTTCATCAGGTATGAAAGCAATTGTATTTGGCGCAC
AATCAATCGCATTGGGTCACAGCAAAACTGTGGTTGCAGGTGGTTTCGAATCAATGTCAC
AAGTGCCATACTATGCCGATAAAATGAGATTCGGTGCAAAGTATGGCAACCAAACATTCA
TCGATGGTT----------ATTCCCGACNGCNCCNGCTCGCGCCATGCCNAAGGCNCNTA
AAAANGCAGGGAGCANNATGTCACAAGTTGATCTCTTTGNAATCAATGAAGCCTTGGCTG
TTGTTGGTCCCGCNNANGCAAAGATCTTAGANATCGATCATAATAAACTCAATGTTAATG
GTGGTGCCGTTGCATTAGGTCANCCAATTGGTTCATCAGGTTGTCGGANTGTTGTCACTC
TTACTCATTTACTTCTTTAATAAAAATCTT