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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB624
Library CH
(Link to library)
Clone ID CHB624
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHB624P
(Link to Original site)
Representative DNA sequence 
>CHB624 (CHB624Q) /CSM/CH/CHB6-A/CHB624Q.Seq.d/
GTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTAT
GATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAAAANA
ATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATACACCATGTTGNGGNGAACAAAA
ATGGGCTTGCTNTAAAGGNACATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAA
TTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTAT
TAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTT
ATTAGGTAAATCATGTAGTTTCCAAAAGAXXXXXXXXXXTTNAAGATGTCCNCCCAAATC
ATGAATGTAAATTTAATGACCAAGGTCATCCAATGCTGTGTAAAGGTTNCNCCATGATAG
ATGTTCATTAAGATGTCCACATGNCCCATGAATGTAAAGTTGATCACAATGGTAAAGGAA
TGTTGNGTCAGATCCCATAGACCTCCCACCACCCAGAAGTTTGTTCATTAAGATGCCCAC
CAAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGT
GATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGT
TCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAG
AGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTT
GCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTC
AACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGT
CCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCAT
AGACTACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCAC
TTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAAC
TGTGAAAGAAAAGGT
sequence update 2002.10.25
Translated Amino Acid sequence 
lkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEKXCHKSSECXVINYTPCXGEQK
WACXKGTFDTCXYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECAL
LGKSCSFQK---

---XDVXPNHECKFNDQGHPMLCKGXXMIDVH*dvhmxheckvdhngkgmlxqip*tshh
pevcslrcppkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrktt
pttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc*s
spr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k*k
*lfnl*rpkl*kkr
Translated Amino Acid sequence (All Frames) 
Frame A:
vknkkiikdvvxkkywsifydipcikilcdgl**ny**kxms*ifgmxcyklytmlxxtk
mgll*rxi*ylxi*k*ll*kfiq*psc*sik*mlqs*wiy*nynsnrvflf*cqd*rmcl
ir*im*fpk---

---xkmsxqimnvnlmtkviqccvkvxp**mfikmstxpmnvklitmvkecxvrshrppt
tqkfvh*dahqkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrserp
hppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccvk
vhhdkcslrcppgheckvdqhgkeccvvahrlppkcslrcppkhecrinhfgeeccvksr
ndcltcedlncerkg

Frame B:
lkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEKXCHKSSECXVINYTPCXGEQK
WACXKGTFDTCXYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECAL
LGKSCSFQK---

---xrcppks*m*i**prssnav*rxxhdrcslrcphxp*m*s*sqw*rnvxsdpidlpp
prslfikmptknmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkdh
thhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvvlk
fttinvh*dvhqamnvklinmeknvallpidyhqnah*dvhqnmnvesitlvknavlkve
miv*lvkt*tvkek

Frame C:
*k*knnkgccx*kileyfl*yslyqnpmrrivikllmkxnvinlrnvll*iihhvxxnkn
glaxkxhlilvhmkivvieihpitkllkyqinasilmdllklqlqpsilvlmprlknvpy
*vnhvvskr---

---XDVXPNHECKFNDQGHPMLCKGXXMIDVH*dvhmxheckvdhngkgmlxqip*tshh
pevcslrcppkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrktt
pttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc*s
spr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k*k
*lfnl*rpkl*kkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB624 (CHB624Q) /CSM/CH/CHB6-A/CHB624Q.Seq.d/                       2074   0.0
AHD802 (AHD802Q) /CSM/AH/AHD8-A/AHD802Q.Seq.d/                       1352   0.0
CHP472 (CHP472Q) /CSM/CH/CHP4-C/CHP472Q.Seq.d/                       1344   0.0
CHN267 (CHN267Q) /CSM/CH/CHN2-C/CHN267Q.Seq.d/                       1344   0.0
AHF431 (AHF431Q) /CSM/AH/AHF4-B/AHF431Q.Seq.d/                       1344   0.0
CHP452 (CHP452Q) /CSM/CH/CHP4-C/CHP452Q.Seq.d/                       1342   0.0
SHE749 (SHE749Q) /CSM/SH/SHE7-C/SHE749Q.Seq.d/                       1338   0.0
CHR829 (CHR829Q) /CSM/CH/CHR8-B/CHR829Q.Seq.d/                       1338   0.0
CHR563 (CHR563Q) /CSM/CH/CHR5-C/CHR563Q.Seq.d/                       1336   0.0
CFB740 (CFB740Q) /CSM/CF/CFB7-B/CFB740Q.Seq.d/                       1336   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1088   0.0    9
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1088   0.0    10
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   1e-11  3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   3e-11  3
AC124167|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   0.061  4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   0.21   2
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.24   4
AC139046|AC139046.4 Mus musculus chromosome 14 clone RP24-88I1 map 14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    32   0.26   10
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.32   1
AC111000|AC111000.3 Homo sapiens BAC clone RP13-644M16 from 4, complete sequence.    32   1.2    8
dna update 2004. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   452   e-125
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   173   9e-42
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   106   2e-21
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    79   4e-13
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    67   1e-09
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    66   2e-09
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    66   2e-09
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    65   3e-09
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        65   6e-09
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    60   1e-07
protein update 2009. 3.29
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for CHB624 is exc
5' end seq. ID CHB624F
5' end seq. 
>CHB624F.Seq
GTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTAT
GATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAAAANA
ATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATACACCATGTTGNGGNGAACAAAA
ATGGGCTTGCTNTAAAGGNACATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAA
TTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTAT
TAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTT
ATTAGGTAAATCATGTAGTTTCCAAAAGANNNNNNNNNN
Length of 5' end seq. 399
3' end seq. ID CHB624Z
3' end seq. 
>CHB624Z.Seq
NNNNNNNNNNTTNAAGATGTCCNCCCAAATCATGAATGTAAATTTAATGACCAAGGTCAT
CCAATGCTGTGTAAAGGTTNCNCCATGATAGATGTTCATTAAGATGTCCACATGNCCCAT
GAATGTAAAGTTGATCACAATGGTAAAGGAATGTTGNGTCAGATCCCATAGACCTCCCAC
CACCCAGAAGTTTGTTCATTAAGATGCCCACCAAAAACATGAATGTAAATTTGATGATCA
TGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAG
AGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACC
ACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGT
TGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTT
AAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAA
AGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCA
ACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACTACCACCAAAATGCTCATTAAGATG
TCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAG
AAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGT
Length of 3' end seq. 766
Connected seq. ID CHB624P
Connected seq. 
>CHB624P.Seq
GTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTAT
GATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAAAANA
ATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATACACCATGTTGNGGNGAACAAAA
ATGGGCTTGCTNTAAAGGNACATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAA
TTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTAT
TAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTT
ATTAGGTAAATCATGTAGTTTCCAAAAGA----------TTNAAGATGTCCNCCCAAATC
ATGAATGTAAATTTAATGACCAAGGTCATCCAATGCTGTGTAAAGGTTNCNCCATGATAG
ATGTTCATTAAGATGTCCACATGNCCCATGAATGTAAAGTTGATCACAATGGTAAAGGAA
TGTTGNGTCAGATCCCATAGACCTCCCACCACCCAGAAGTTTGTTCATTAAGATGCCCAC
CAAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGT
GATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGT
TCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAG
AGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTT
GCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTC
AACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGT
CCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCAT
AGACTACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCAC
TTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAAC
TGTGAAAGAAAAGGT
Length of connected seq. 1145
Full length Seq ID -
Full length Seq. -
Length of full length seq. -