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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB590
Library CH
(Link to library)
Clone ID CHB590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13863-1
Original site URL
Representative seq. ID CHB590P
(Link to Original site)
Representative DNA sequence 
>CHB590 (CHB590Q) /CSM/CH/CHB5-D/CHB590Q.Seq.d/
TTAGAATTAAATAAAATAATAGTNGTNCCATTAATATCAAAAGATTCATTAGATNTTAAN
GATGCAAAAAATTNCTNTGGANCCGAGTTNTNCCCAAATCAACCAATTCCAACCNTAGTT
TCAGCTCAATCTGAAGTANATTNTTTAATTAATCAAACTTNTGGTAATAATGATGAANAA
AGATTAGTTTTNTTNTTAAANCANCAXXXXXXXXXXAATGTCATTCAAATGTAAACAAAC
TGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAGCAAT
TCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAGTGGCCAAACGATATCTA
TAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCAAATTATCTTAACAA
TGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAATTCAAATAATCCATCAAC
AACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTCATCATCATCATTGGCAAC
AAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGTTTCAAAATTCTTTAACAA
ATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAATGCAGATCTTGAAAATAG
ATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATTTAAAGAAAGAGATAACCA
TCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAAAGCTATTGAATGTGATGC
TGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCACCCAGATGGTACTTCATT
TNATATTCAAAACTTAATTTTAAGCAAAGATCACAACAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
LELNKIIVVPLISKDSLDXXDAKNXXGXEXXPNQPIPTXVSAQSEVXXLINQTXGNNDEX
RLVXXLXX---

---MSFKCKQTDGNKLPFLQYLAGMAMVEAIHSFPSASDLNLRLKWPNDIYSNEPGMKVG
GVLCESNYLNNEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSSSSLATSTDIPIYIS
REELVSKFFNKFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFKERDNHHVKIIGISD
SGFLKAIECDADGNTSSDSETVELHPDGTSFXIQNLILSKDHNN
Translated Amino Acid sequence (All Frames) 
Frame A:
LELNKIIVVPLISKDSLDXXDAKNXXGXEXXPNQPIPTXVSAQSEVXXLINQTXGNNDEX
RLVXXLXX---

---nviqm*tn*w**itipsifgwygngrsnslfpkci*fkssfevakryl***tryesw
wcpl*ikls*q*i*cchwcwc*sfkfk*sinnyksinskekiwifiiiignky*ysnly*
*rrigfkil*qirtnvygiykrwl*crs*k*ih*lmdayksncki*rkr*psc*nhwyf*
*wfp*sy*m*c*w*yif*l*nr*asprwyfixysklnfkqrsqq

Frame B:
*n*ik**xxh*yqkih*xlxmqkixxxpsxxqinqfqp*fqlnlkxix*liklxvimmxk
d*fxx*xx---

---MSFKCKQTDGNKLPFLQYLAGMAMVEAIHSFPSASDLNLRLKWPNDIYSNEPGMKVG
GVLCESNYLNNEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSSSSLATSTDIPIYIS
REELVSKFFNKFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFKERDNHHVKIIGISD
SGFLKAIECDADGNTSSDSETVELHPDGTSFXIQNLILSKDHNN

Frame C:
rik*nnsxxinikrfirx*xckkxlwxrvxpkstnsnxsfssi*sxxfn*snxw****xk
isfxxkxx---

---chsnvnklmvinyhsfniwlvwqwskqftlsqvhli*ifv*sgqtisivmnqv*klv
vssvnqiiltmnlmlslvlvlifqiqiihqql*in*fkrknmdfhhhhwqqvlifqfilv
eknwfqnsltnsnqclwnlqemalmqilkidtltygciqikl*nlkkeitimlkslvfli
vvslkllnvmlmvihlltlkplsftqmvlhxifkt*f*akittt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB590 (CHB590Q) /CSM/CH/CHB5-D/CHB590Q.Seq.d/                       1574   0.0
SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/                       1281   0.0
SFJ133 (SFJ133Q) /CSM/SF/SFJ1-B/SFJ133Q.Seq.d/                       1279   0.0
SFF405 (SFF405Q) /CSM/SF/SFF4-A/SFF405Q.Seq.d/                       1233   0.0
AFC713 (AFC713Q) /CSM/AF/AFC7-A/AFC713Q.Seq.d/                       1136   0.0
SFE209 (SFE209Q) /CSM/SF/SFE2-A/SFE209Q.Seq.d/                       1120   0.0
AFN413 (AFN413Q) /CSM/AF/AFN4-A/AFN413Q.Seq.d/                        936   0.0
AFO680 (AFO680Q) /CSM/AF/AFO6-D/AFO680Q.Seq.d/                        932   0.0
AFH686 (AFH686Q) /CSM/AF/AFH6-D/AFH686Q.Seq.d/                        858   0.0
SFI426 (SFI426Q) /CSM/SF/SFI4-B/SFI426Q.Seq.d/                        839   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   7e-08  18
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   7e-06  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   6e-05  20
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   6e-05  22
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   3e-04  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   5e-04  17
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    34   5e-04  12
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   0.001  15
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   0.003  13
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    34   0.005  14
dna update 2004. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_425(AP008208|pid:none) Oryza sativa (japonica cultivar-...   129   2e-28
AP005804_18(AP005804|pid:none) Oryza sativa Japonica Group genom...   125   2e-27
AC006053_17(AC006053|pid:none) Arabidopsis thaliana chromosome 2...   123   7e-27
(P50747) RecName: Full=Biotin--protein ligase;          EC=6.3.4...   122   1e-26
AF414940_1(AF414940|pid:none) Arabidopsis thaliana holocarboxyla...   121   3e-26
G84651(G84651)biotin holocarboxylase synthetase [imported] - Ara...   119   1e-25
AK168925_1(AK168925|pid:none) Mus musculus 16 days embryo kidney...   119   2e-25
(Q920N2) RecName: Full=Biotin--protein ligase;          EC=6.3.4...   119   2e-25
BC125906_1(BC125906|pid:none) Danio rerio holocarboxylase synthe...   118   2e-25
BC068401_1(BC068401|pid:none) Danio rerio holocarboxylase synthe...   118   2e-25
protein update 2009. 3.29
PSORT 

 psg: 0.94  gvh: 0.38  alm: 0.43  top: 0.40  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHB590 is nuc
5' end seq. ID CHB590F
5' end seq. 
>CHB590F.Seq
TTAGAATTAAATAAAATAATAGTNGTNCCATTAATATCAAAAGATTCATTAGATNTTAAN
GATGCAAAAAATTNCTNTGGANCCGAGTTNTNCCCAAATCAACCAATTCCAACCNTAGTT
TCAGCTCAATCTGAAGTANATTNTTTAATTAATCAAACTTNTGGTAATAATGATGAANAA
AGATTAGTTTTNTTNTTAAANCANCANNNNNNNNNN
Length of 5' end seq. 216
3' end seq. ID CHB590Z
3' end seq. 
>CHB590Z.Seq
NNNNNNNNNNAATGTCATTCAAATGTAAACAAACTGATGGTAATAAATTACCATTCCTTC
AATATTTGGCTGGTATGGCAATGGTCGAAGCAATTCACTCTTTCCCAAGTGCATCTGATT
TAAATCTTCGTTTGAAGTGGCCAAACGATATCTATAGTAATGAACCAGGTATGAAAGTTG
GTGGTGTCCTCTGTGAATCAAATTATCTTAACAATGAATTTGATGTTGTCATTGGTGTTG
GTGTTAATCTTTCAAATTCAAATAATCCATCAACAACTATAAATCAATTAATTCAAAAGA
AAAAATATGGATTTTCATCATCATCATTGGCAACAAGTACTGATATTCCAATTTATATTA
GTAGAGAAGAATTGGTTTCAAAATTCTTTAACAAATTCGAACCAATGTTTATGGAATTTA
CAAGAGATGGCTTTAATGCAGATCTTGAAAATAGATACACTGACTTATGGATGCATACAA
ATCAAATTGTAAAATTTAAAGAAAGAGATAACCATCATGTTAAAATCATTGGTATTTCTG
ATAGTGGTTTCCTTAAAGCTATTGAATGTGATGCTGATGGTAATACATCTTCTGACTCTG
AAACCGTTGAGCTTCACCCAGATGGTACTTCATTTNATATTCAAAACTTAATTTTAAGCA
AAGATCACAACAACC
Length of 3' end seq. 675
Connected seq. ID CHB590P
Connected seq. 
>CHB590P.Seq
TTAGAATTAAATAAAATAATAGTNGTNCCATTAATATCAAAAGATTCATTAGATNTTAAN
GATGCAAAAAATTNCTNTGGANCCGAGTTNTNCCCAAATCAACCAATTCCAACCNTAGTT
TCAGCTCAATCTGAAGTANATTNTTTAATTAATCAAACTTNTGGTAATAATGATGAANAA
AGATTAGTTTTNTTNTTAAANCANCA----------AATGTCATTCAAATGTAAACAAAC
TGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAGCAAT
TCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAGTGGCCAAACGATATCTA
TAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCAAATTATCTTAACAA
TGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAATTCAAATAATCCATCAAC
AACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTCATCATCATCATTGGCAAC
AAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGTTTCAAAATTCTTTAACAA
ATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAATGCAGATCTTGAAAATAG
ATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATTTAAAGAAAGAGATAACCA
TCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAAAGCTATTGAATGTGATGC
TGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCACCCAGATGGTACTTCATT
TNATATTCAAAACTTAATTTTAAGCAAAGATCACAACAACC
Length of connected seq. 871
Full length Seq ID -
Full length Seq. -
Length of full length seq. -