>CHB536 (CHB536Q) /CSM/CH/CHB5-B/CHB536Q.Seq.d/
XXXXXXXXXXANCNNAGATTCAAGAAAAAAAAGGTNTNCCACCAGGAGAACCAAGGTTTC
ATTTTNNNTGGTAAACANTTAGAAAANGGTGGANTNTNTTTGATACAATATCCAAAAAGA
ATCAACTCTCCACTTGGTCTTCAGATTAAGAGGTGGNANGCAAATNTTTGTNANAACATT
AAGTGGTAANGGCCATCANTGTTGAAGTTGAGGGCTCAGANAATATTGANAAATGTTAAA
ACAAANATTCAAGANAAANGAAGGGTATCCCNCCAGACCAACAAAGATTAATTTTCGGCT
GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGNAATCCNCT
CTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGT
AAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATC
CAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTG
GAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTT
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACA
CTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAA
GGTATCCCACCA

---xrfkkkkvxhqenqgfixxgkxlexggxxliqypkrinsplglqikrwxanxcxnik
w*xpsxlklraqxilxnvktxiqxkxrvsxqtnkd*FSAGKQLEDGRTLSDYNIQKXSXL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEG
IPP

Frame A:
---xxiqekkgxppgeprfhfxw*txrkxwxxfdtiskknqlstwssd*evxxkxlxxh*
vvxaixvevegsxnixkc*nkxsrxxkgippdqqrlifgw*tirrwsysl*lqhskxixs
pfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tig
gwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrr
ypt


Frame B:
---xrfkkkkvxhqenqgfixxgkxlexggxxliqypkrinsplglqikrwxanxcxnik
w*xpsxlklraqxilxnvktxiqxkxrvsxqtnkd*FSAGKQLEDGRTLSDYNIQKXSXL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEG
IPP


Frame C:
---xdsrkkrxxtrrtkvsfxxvnx*kxvxxx*yniqkestlhlvfrlrggxqxfvxtls
gxghxc*s*glrxy*xmlkqxfkxxegypxrptkinfrlvnn*kmvvlslittfkxnpls
i*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwr
mvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkv
sh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB536 (CHB536Q) /CSM/CH/CHB5-B/CHB536Q.Seq.d/                       1209   0.0
CHD396 (CHD396Q) /CSM/CH/CHD3-D/CHD396Q.Seq.d/                       1074   0.0
SFK603 (SFK603Q) /CSM/SF/SFK6-A/SFK603Q.Seq.d/                       1066   0.0
CHC282 (CHC282Q) /CSM/CH/CHC2-D/CHC282Q.Seq.d/                       1066   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                       1065   0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/                       1065   0.0
CHE361 (CHE361Q) /CSM/CH/CHE3-C/CHE361Q.Seq.d/                       1065   0.0
CHD282 (CHD282Q) /CSM/CH/CHD2-D/CHD282Q.Seq.d/                       1065   0.0
CHC172 (CHC172Q) /CSM/CH/CHC1-C/CHC172Q.Seq.d/                       1065   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1065   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   842   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   835   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   835   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   525   e-161  3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   494   e-145  4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   478   e-140  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   389   e-120  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   389   e-120  3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      159   1e-67  6
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   188   5e-67  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene...   278   1e-81
A29584(A29584) ubiquitin precursor - pig (fragment)  &M18159_1(M...   273   3e-80
AF088848_1(AF088848|pid:none) Capsicum chinense polyubiquitin (U...   273   4e-80
UQFS(S03599)ubiquitin precursor - common sunflower (fragment)         272   1e-79
T12035(T12035) polyubiquitin 4.4 - kidney bean  &U77939_1(U77939...   272   1e-79
AF528710_1(AF528710|pid:none) Arabidopsis thaliana ecotype Ita-0...   271   1e-79
Z35759_1(Z35759|pid:none) T.pyriformis (CGL) polyubiquitin gene ...   269   7e-79
EF145885_1(EF145885|pid:none) Populus trichocarpa clone WS0114_A...   271   9e-79
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part...   264   2e-77
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part...   264   2e-77

 psg: 0.64  gvh: 0.49  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHB536 is cyt

>CHB536Z.Seq
NNNNNNNNNNANCNNAGATTCAAGAAAAAAAAGGTNTNCCACCAGGAGAACCAAGGTTTC
ATTTTNNNTGGTAAACANTTAGAAAANGGTGGANTNTNTTTGATACAATATCCAAAAAGA
ATCAACTCTCCACTTGGTCTTCAGATTAAGAGGTGGNANGCAAATNTTTGTNANAACATT
AAGTGGTAANGGCCATCANTGTTGAAGTTGAGGGCTCAGANAATATTGANAAATGTTAAA
ACAAANATTCAAGANAAANGAAGGGTATCCCNCCAGACCAACAAAGATTAATTTTCGGCT
GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGNAATCCNCT
CTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGT
AAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATC
CAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTG
GAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTT
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACA
CTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAA
GGTATCCCACCA