CHB492
Library CH
(Link to library)
Clone ID CHB492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHB492 (CHB492Q) /CSM/CH/CHB4-D/CHB492Q.Seq.d/
XXXXXXXXXXTTTGTTAAAACTNTCNCTNGGTAAGACCNTCCNCTTTANAAANGTNGAAG
GTTTTGAAAACATTGAAAAATGTNAAAGCCAAGATCCAAAANAAANAAGGTNTTCCCCCA
GATCAAACAAGGTTTTTATTTTCGGTGGTAAANCAATTAAAAANATGGTGGNACTNTTTC
CGGACTATAACATTCAAAAAGGGAATCCNCTCTCCACTTAGTTTTAAGATTAANAGGTGG
TATGCAAATNTTTGTTAAAACTCTCACCGGTAAAACAATCACTTTAGAAGTTGAAGGTTN
TGATAACATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA
ACAACGTNTCATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAA
CATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAANAGGTGGTATGCAAATNTT
TGTTAAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGAAGGTTNTGATAATATTGA
AAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTAAT
CTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAATATTCAAAAAGA
ATCCACTCTCCATTTAGTTTTAAGATTAANAGGTGGTATGCAAATCTTTGTTAAAACTCT
CACTGGTAAAACNATCNCTTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTTAAAGC
CAAGATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTANT
sequence update 2002. 9.10
Translated Amino Acid sequence
---vktxxx*dxplxkxxrf*kh*kmxkprskxxkvfpqikqgfyfrw*xn*kxggtxsg
l*HSKRESXLHLVLRLXGGMQXFVKTLTGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQ
RXIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQXFVKTLTGKTITLEVEGXDNIEN
VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQIFVKTLT
GKTIXLEVEGSDNIENVKAKIQDKEGIPPDQQRL


Translated Amino Acid sequence (All Frames)
Frame A:
---llklslgktxxfxxvegfeniekcxsqdpkxxrxsprsnkvfifggkxikxmvxlfp
dyniqkgnplst*f*d*xvvckxllklspvkqsl*klkvxitlkm*rlkfkikkvfhqin
nvsfllvnnwkmvvlsltitfkrnqlft*f*d*xvvckxllklslvklslwklkvxiilk
m*rlkskikkvfxqinkd*slpvnn*kmvvlflttifkknplsi*f*d*xvvcksllkls
lvkxsl*klkvlitlkmlkprskikkvfxqinkdx


Frame B:
---c*nxxxvrpsxlxxxkvlktlknvkakiqxkxgxppdqtrflfsvvxqlkxwwxxfr
titfkkgixsplsfkixrwyanxc*nshr*nnhfrs*rx**h*kckg*nsr*rrystrst
txhfcw*tigrwsysl*l*hskginsslsfkixrwyanxc*nshw*nyhfgs*rx**y*k
ckg*npr*rrysxrstkinlcr*tirrwsysf*lqyskrihspfsfkixrwyanlc*nsh
w*nxxfrs*rf**h*kc*sqdpr*rrysxrstkix


Frame C:
---vktxxx*dxplxkxxrf*kh*kmxkprskxxkvfpqikqgfyfrw*xn*kxggtxsg
l*HSKRESXLHLVLRLXGGMQXFVKTLTGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQ
RXIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQXFVKTLTGKTITLEVEGXDNIEN
VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQIFVKTLT
GKTIXLEVEGSDNIENVKAKIQDKEGIPPDQQRL


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHB492 (CHB492Q) /CSM/CH/CHB4-D/CHB492Q.Seq.d/ 1445 0.0
CFF694 (CFF694Q) /CSM/CF/CFF6-D/CFF694Q.Seq.d/ 1231 0.0
SFE570 (SFE570Q) /CSM/SF/SFE5-C/SFE570Q.Seq.d/ 1225 0.0
AFO288 (AFO288Q) /CSM/AF/AFO2-D/AFO288Q.Seq.d/ 1217 0.0
AFI280 (AFI280Q) /CSM/AF/AFI2-D/AFI280Q.Seq.d/ 1209 0.0
AFK605 (AFK605Q) /CSM/AF/AFK6-A/AFK605Q.Seq.d/ 1205 0.0
AFH836 (AFH836Q) /CSM/AF/AFH8-B/AFH836Q.Seq.d/ 1205 0.0
VFB846 (VFB846Q) /CSM/VF/VFB8-B/VFB846Q.Seq.d/ 1203 0.0
AFK673 (AFK673Q) /CSM/AF/AFK6-D/AFK673Q.Seq.d/ 1203 0.0
VFK831 (VFK831Q) /CSM/VF/VFK8-B/VFK831Q.Seq.d/ 1201 0.0

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 1154 0.0 4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 886 0.0 2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 886 0.0 2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 670 0.0 4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 749 0.0 3
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 464 e-162 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 464 e-162 3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 464 e-162 3
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 408 e-146 3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 408 e-146 3
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 385 e-106
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 382 e-106
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 382 e-106
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 382 e-106
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 371 e-102
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 371 e-102
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 371 e-102
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 371 e-102
FN323948_1(FN323948|pid:none) Schistosoma japonicum isolate Anhu... 371 e-102
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 369 e-102
protein update 2009. 5.17
PSORT

psg: 0.72 gvh: 0.53 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CHB492 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHB492Z
3' end seq.
>CHB492Z.Seq
NNNNNNNNNNTTTGTTAAAACTNTCNCTNGGTAAGACCNTCCNCTTTANAAANGTNGAAG
GTTTTGAAAACATTGAAAAATGTNAAAGCCAAGATCCAAAANAAANAAGGTNTTCCCCCA
GATCAAACAAGGTTTTTATTTTCGGTGGTAAANCAATTAAAAANATGGTGGNACTNTTTC
CGGACTATAACATTCAAAAAGGGAATCCNCTCTCCACTTAGTTTTAAGATTAANAGGTGG
TATGCAAATNTTTGTTAAAACTCTCACCGGTAAAACAATCACTTTAGAAGTTGAAGGTTN
TGATAACATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA
ACAACGTNTCATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAA
CATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAANAGGTGGTATGCAAATNTT
TGTTAAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGAAGGTTNTGATAATATTGA
AAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTAAT
CTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAATATTCAAAAAGA
ATCCACTCTCCATTTAGTTTTAAGATTAANAGGTGGTATGCAAATCTTTGTTAAAACTCT
CACTGGTAAAACNATCNCTTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTTAAAGC
CAAGATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTANT
Length of 3' end seq. 828
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -