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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB488
Library CH
(Link to library)
Clone ID CHB488
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14971-1
Original site URL
Representative seq. ID CHB488P
(Link to Original site)
Representative DNA sequence 
>CHB488 (CHB488Q) /CSM/CH/CHB4-D/CHB488Q.Seq.d/
GAAAAAAAAAAATAATTTTAAAACTCAATTTATTATATCAATTNTTTTTTAAAATCCTGT
NTTTTANACCACAATCATTCCCAACAAAACAATTAGATTTTTATTTTANAATATAXXXXX
XXXXXTAGATGAAATTAATAAATCCCCAGAAGGTGATATTTTAGAACTCTTTAGAAATAG
TTATCTTTTAACCGATAAACAAATGAATGAAAGTGAAATCCAATTCTCTGGTACTACATC
TATTACCGCCTTAATTAGAAAAAATCCAGTTGATGGTGAAAAATATCTTTATGTTGCCAA
TGCTGGTGATGCCCGTGCAGTTGTTTGTCATAATAAAGTTGCAGAAAGATTATCATACGA
TCATAAAGGATCTGATCCAGAAGAAGTAAAACGTATTGATGCTGCAGGTGGTTTTGTATG
TAATGGTCGTGTTAATGGTATTCTCGCTGTAACCCGTTCACTTGGTGATCACTCAATGAA
AGATCATGTCATTGGTGACCCATATAAACGTTCCAATTAAATTAGATTCTGGTCATACTC
ATTTAATTTTAGCTTGTGATGGTCTTTGGGATGTTACAAGTGACCAAGATGCAGTGGACC
TTATTTTAAATGAAACTGAAGCACAAAAGATGAGTGATAAATTATTATNACATGCATTAA
AGAAAGGAAGTACCGATAACATTAGTATTANCGTTGTTATTTTGTAAGAAAAGAAAACTA
AAACCTCAACCATAACATCACACATATCACAACAAATCATATCAACAATAAACAACCAAA
AACACNCACCACAATTCAGATACCANAAGCAACACAACTCAGATANGTATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KKKIILKLNLLYQXFFKILXFXPQSFPTKQLDFYFXI---

---DEINKSPEGDILELFRNSYLLTDKQMNESEIQFSGTTSITALIRKNPVDGEKYLYVA
NAGDARAVVCHNKVAERLSYDHKGSDPEEVKRIDAAGGFVCNGRVNGILAVTRSLGDHSM
KDHVIGDPYKRSN*irfwsysfnfsl*wslgcyk*prcsgpyfk*n*stkde**iixtci
kerkyr*h*yxrcyfvrken*nlnhnithittnhinnkqpktxttiqipxatqlrxv*
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkk*f*nsiyyinxflkscxlxhnhsqqnn*ifilxy---

---*mklinpqkvif*nsleivif*pink*mkvksnslvlhllpp*lekiqlmvknifml
pmlvmpvqlfviiklqkdyhtiikdliqkk*nvlmlqvvlyvmvvlmvfsl*pvhlvitq
*kimslvthinvpikldsghthlilacdglwdvtsdqdavdlilneteaqkmsdkllxha
lkkgstdnisixvvil*ekktktstitshisqqiistinnqkhxpqfryxkqhnsdxy

Frame B:
kkknnfktqfiisixf*npvfxttiipnktirflfxni---

---r*n**iprr*yfrtl*k*lsfnr*tne*k*npilwyyiyyrln*kkss*w*kislcc
qcw*cpcscls**scrkiiirs*ri*srrskty*ccrwfcm*wsc*wysrcnpftw*sln
erschw*pi*tfqln*ilvili*f*lvmvfgmlqvtkmqwtlf*mklkhkr*vinyyxmh
*rkevpitlvlxllfckkrklkpqp*hhtyhnksyqq*ttknthhnsdtxsnttqixi

Frame C:
KKKIILKLNLLYQXFFKILXFXPQSFPTKQLDFYFXI---

---DEINKSPEGDILELFRNSYLLTDKQMNESEIQFSGTTSITALIRKNPVDGEKYLYVA
NAGDARAVVCHNKVAERLSYDHKGSDPEEVKRIDAAGGFVCNGRVNGILAVTRSLGDHSM
KDHVIGDPYKRSN*irfwsysfnfsl*wslgcyk*prcsgpyfk*n*stkde**iixtci
kerkyr*h*yxrcyfvrken*nlnhnithittnhinnkqpktxttiqipxatqlrxv*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB488 (CHB488Q) /CSM/CH/CHB4-D/CHB488Q.Seq.d/                       1513   0.0
CFF291 (CFF291Q) /CSM/CF/CFF2-D/CFF291Q.Seq.d/                       1292   0.0
VFI716 (VFI716Q) /CSM/VF/VFI7-A/VFI716Q.Seq.d/                       1267   0.0
FC-AH17 (FC-AH17Q) /CSM/FC/FC-AH/FC-AH17Q.Seq.d/                     1215   0.0
SFF243 (SFF243Q) /CSM/SF/SFF2-B/SFF243Q.Seq.d/                       1201   0.0
SFK807 (SFK807Q) /CSM/SF/SFK8-A/SFK807Q.Seq.d/                       1172   0.0
SLH325 (SLH325Q) /CSM/SL/SLH3-B/SLH325Q.Seq.d/                       1168   0.0
SLC184 (SLC184Q) /CSM/SL/SLC1-D/SLC184Q.Seq.d/                       1166   0.0
CHE762 (CHE762Q) /CSM/CH/CHE7-C/CHE762Q.Seq.d/                       1142   0.0
SLB463 (SLB463Q) /CSM/SL/SLB4-C/SLB463Q.Seq.d/                       1080   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX004799|BX004799.9 Zebrafish DNA sequence from clone CH211-176M18 in linkage group 9.    40   0.006  6
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    32   0.010  11
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             36   0.040  13
CR753876|CR753876.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-116A7.    42   0.040  6
AC140916|AC140916.17 Medicago truncatula clone mth2-12b2, complete sequence.    42   0.066  7
AX344570|AX344570.1 Sequence 21 from Patent WO0200932.             34   0.074  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.086  14
AC137666|AC137666.19 Medicago truncatula clone mth2-20a18, WORKING DRAFT SEQUENCE, 2 ordered pieces.    36   0.12   7
AL451045|AL451045.14 Human DNA sequence from clone RP11-549E17 on chromosome 9.    44   0.25   5
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.25   18
dna update 2004. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_470(AE017341|pid:none) Cryptococcus neoformans var. neo...   109   5e-36
AM270324_15(AM270324|pid:none) Aspergillus niger contig An14c017...    97   2e-32
CU633900_497(CU633900|pid:none) Podospora anserina genomic DNA c...   100   8e-32
AP007166_406(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    97   1e-31
(P35182) RecName: Full=Protein phosphatase 2C homolog 1;        ...    92   2e-30
CR380949_181(CR380949|pid:none) Candida glabrata strain CBS138 c...    98   6e-30
AE016818_337(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    93   1e-29
(P40371) RecName: Full=Protein phosphatase 2C homolog 1;        ...    92   1e-28
CR382126_637(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    84   6e-25
CR382130_886(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    86   2e-24
protein update 2009. 3.29
PSORT 

 psg: 0.79  gvh: 0.53  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHB488 is cyt
5' end seq. ID CHB488F
5' end seq. 
>CHB488F.Seq
GAAAAAAAAAAATAATTTTAAAACTCAATTTATTATATCAATTNTTTTTTAAAATCCTGT
NTTTTANACCACAATCATTCCCAACAAAACAATTAGATTTTTATTTTANAATATANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID CHB488Z
3' end seq. 
>CHB488Z.Seq
NNNNNNNNNNTAGATGAAATTAATAAATCCCCAGAAGGTGATATTTTAGAACTCTTTAGA
AATAGTTATCTTTTAACCGATAAACAAATGAATGAAAGTGAAATCCAATTCTCTGGTACT
ACATCTATTACCGCCTTAATTAGAAAAAATCCAGTTGATGGTGAAAAATATCTTTATGTT
GCCAATGCTGGTGATGCCCGTGCAGTTGTTTGTCATAATAAAGTTGCAGAAAGATTATCA
TACGATCATAAAGGATCTGATCCAGAAGAAGTAAAACGTATTGATGCTGCAGGTGGTTTT
GTATGTAATGGTCGTGTTAATGGTATTCTCGCTGTAACCCGTTCACTTGGTGATCACTCA
ATGAAAGATCATGTCATTGGTGACCCATATAAACGTTCCAATTAAATTAGATTCTGGTCA
TACTCATTTAATTTTAGCTTGTGATGGTCTTTGGGATGTTACAAGTGACCAAGATGCAGT
GGACCTTATTTTAAATGAAACTGAAGCACAAAAGATGAGTGATAAATTATTATNACATGC
ATTAAAGAAAGGAAGTACCGATAACATTAGTATTANCGTTGTTATTTTGTAAGAAAAGAA
AACTAAAACCTCAACCATAACATCACACATATCACAACAAATCATATCAACAATAAACAA
CCAAAAACACNCACCACAATTCAGATACCANAAGCAACACAACTCAGATANGTATAA
Length of 3' end seq. 717
Connected seq. ID CHB488P
Connected seq. 
>CHB488P.Seq
GAAAAAAAAAAATAATTTTAAAACTCAATTTATTATATCAATTNTTTTTTAAAATCCTGT
NTTTTANACCACAATCATTCCCAACAAAACAATTAGATTTTTATTTTANAATATA-----
-----TAGATGAAATTAATAAATCCCCAGAAGGTGATATTTTAGAACTCTTTAGAAATAG
TTATCTTTTAACCGATAAACAAATGAATGAAAGTGAAATCCAATTCTCTGGTACTACATC
TATTACCGCCTTAATTAGAAAAAATCCAGTTGATGGTGAAAAATATCTTTATGTTGCCAA
TGCTGGTGATGCCCGTGCAGTTGTTTGTCATAATAAAGTTGCAGAAAGATTATCATACGA
TCATAAAGGATCTGATCCAGAAGAAGTAAAACGTATTGATGCTGCAGGTGGTTTTGTATG
TAATGGTCGTGTTAATGGTATTCTCGCTGTAACCCGTTCACTTGGTGATCACTCAATGAA
AGATCATGTCATTGGTGACCCATATAAACGTTCCAATTAAATTAGATTCTGGTCATACTC
ATTTAATTTTAGCTTGTGATGGTCTTTGGGATGTTACAAGTGACCAAGATGCAGTGGACC
TTATTTTAAATGAAACTGAAGCACAAAAGATGAGTGATAAATTATTATNACATGCATTAA
AGAAAGGAAGTACCGATAACATTAGTATTANCGTTGTTATTTTGTAAGAAAAGAAAACTA
AAACCTCAACCATAACATCACACATATCACAACAAATCATATCAACAATAAACAACCAAA
AACACNCACCACAATTCAGATACCANAAGCAACACAACTCAGATANGTATAA
Length of connected seq. 822
Full length Seq ID -
Full length Seq. -
Length of full length seq. -