AFF354
Library AF
(Link to library)
Clone ID AFF354
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFF354P
(Link to Original site)
Representative DNA sequence
>AFF354 (AFF354Q) /CSM/AF/AFF3-C/AFF354Q.Seq.d/
AAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAA
GCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCA
CCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTA
GAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAA
GGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACT
GTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATGAAGGA
TTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGAT
GATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATT
CCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTA
CCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTTXXXXXX
XXXXTGGTATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAA
ATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAG
ATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGT
ACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGT
ATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATG
TCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAG
CTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAG
TTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAAT
TAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGG
GTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTA
TCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATA
TTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGT
TNNATTAAATAAATAAACCTTTATTCAT
sequence update 2001. 6. 2
Translated Amino Acid sequence
KIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLL
EKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEG
LHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIHL
PQYVEKFQAEIQIPSLVV---

---GIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFS
WYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFK
AADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVY
MGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHS
KXX*inkplf


Translated Amino Acid sequence (All Frames)
Frame A:
KIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLL
EKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEG
LHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIHL
PQYVEKFQAEIQIPSLVV---

---wyrsifipyssssfrsc*ksinw*sr*kitr*nsttsfrsnrkmc*nfrrnhl**il
mvqkyhssh*rfnpiddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*csfttiiq
ss*cincikrnfrn*stiwc*sylqng*mcfrlgfttn*trirksirrsfksflwqrpri
hg*rwfhpihenvt*pfqlsiyrywfirsrfkcswsk*ilrysicqeiiklcylfircsf
qvxlnk*tfih

Frame B:
kln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkkqfny*
rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgmkd
yihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpknlvqsiy
hnmlrssklkfkfhhw*---

---GIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFS
WYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFK
AADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVY
MGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHS
KXX*inkplf

Frame C:
n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrsnsiir
emdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg*ri
tsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrriwfnpft
tic*evps*nsnsiigs---

---vsfhlhsvffvkf*ivlkin*lvksikdytlkfhniv*iksqnvlkf*akpsmmnsh
gtkiplqslki*pn**stklgiqlfaspvlkvfhtlqmlvms*eltpplklvfvyhhhsk
qlmhqly*kkfsklihhmvlklpskwinvlqvgihhkldqn*kkh*eklqifslakttyt
wvkvvpshs*kcymtvsivnlsllvy*vqvqmlmvqmns*ifhlprny*vvlfiy*mlip
sxik*inlys

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF354 (AFF354Q) /CSM/AF/AFF3-C/AFF354Q.Seq.d/ 2482 0.0
AFD120 (AFD120Q) /CSM/AF/AFD1-A/AFD120Q.Seq.d/ 2458 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1447 0.0
AFE660 (AFE660Q) /CSM/AF/AFE6-C/AFE660Q.Seq.d/ 1445 0.0
AFC609 (AFC609Q) /CSM/AF/AFC6-A/AFC609Q.Seq.d/ 1445 0.0
AFN766 (AFN766Q) /CSM/AF/AFN7-C/AFN766Q.Seq.d/ 1439 0.0
AFL825 (AFL825Q) /CSM/AF/AFL8-B/AFL825Q.Seq.d/ 1439 0.0
AFD440 (AFD440Q) /CSM/AF/AFD4-B/AFD440Q.Seq.d/ 1439 0.0
AFD382 (AFD382Q) /CSM/AF/AFD3-D/AFD382Q.Seq.d/ 1439 0.0
AHL611 (AHL611Q) /CSM/AH/AHL6-A/AHL611Q.Seq.d/ 1437 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC024357|AC024357.3 Mus musculus clone RP23-1E4, WORKING DRAFT SEQUENCE, 41 unordered pieces. 34 0.012 12
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13. 38 0.041 11
AC121570|AC121570.4 Mus musculus BAC clone RP23-228G6 from 16, complete sequence. 38 0.091 8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 34 0.15 14
AC116446|AC116446.4 Mus musculus chromosome 9 clone RP24-142M20 map 9, WORKING DRAFT SEQUENCE, 5 ordered pieces. 36 0.16 9
CG730970|CG730970.1 1119131F03.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence. 28 0.22 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 30 0.29 19
BI435853|BI435853.1 EST538614 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.33 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.33 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.33 1
dna update 2004. 3.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 236 1e-60
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 236 2e-60
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 234 4e-60
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 234 7e-60
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 233 1e-59
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 231 3e-59
CP000316_4777(CP000316|pid:none) Polaromonas sp. JS666, complete... 217 6e-55
CP000512_4684(CP000512|pid:none) Acidovorax avenae subsp. citrul... 216 2e-54
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple... 215 2e-54
CP000267_395(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 215 2e-54
protein update 2009. 4.19
PSORT

psg: 0.66 gvh: 0.29 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for AFF354 is cyt

5' end seq. ID AFF354F
5' end seq.
>AFF354F.Seq
AAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAA
GCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCA
CCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTA
GAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAA
GGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACT
GTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATGAAGGA
TTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGAT
GATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATT
CCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTA
CCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTT------
----
Length of 5' end seq. 594
3' end seq. ID AFF354Z
3' end seq.
>AFF354Z.Seq
----------TGGTATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTG
CTGAAAATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATC
GTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCT
CATGGTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAA
CTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTG
GTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCA
AAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTG
CTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGAC
CAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTAT
ACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTC
AATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCT
TAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATT
CCAAGTTNNATTAAATAAATAAACCTTTATTCAT
Length of 3' end seq. 744
Connected seq. ID AFF354P
Connected seq.
>AFF354P.Seq
AAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAA
GCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCA
CCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTA
GAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAA
GGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACT
GTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATGAAGGA
TTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGAT
GATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATT
CCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTA
CCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTT------
----TGGTATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAA
ATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAG
ATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGT
ACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGT
ATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATG
TCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAG
CTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAG
TTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAAT
TAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGG
GTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTA
TCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATA
TTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGT
TNNATTAAATAAATAAACCTTTATTCAT
Length of connected seq. 1338
Full length Seq ID -
Full length Seq. -
Length of full length seq. -