>CHB378 (CHB378Q) /CSM/CH/CHB3-D/CHB378Q.Seq.d/
XXXXXXXXXXACCAATTTCACTGGTCCAGCTCACAAGAATCAAATTACNTCAATTAAAAT
CAATGGTGATCAACTCATTACTTGCGCTATGGATGATAGTGTTAAAATCTCAAGTATCTC
TAAAAAAACCTATGGTGAAAGTATTGGTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTC
TGGTGATGTTGTCGTTGCTGTCTCAATGAAAACCATTTATGTCATTAAAGGTGGTAAAAT
CGTTTCACAAACTGCTGCCACTTGGGAACCAACCTCTGTTGCCATCAATGATACTGAAGT
TTCAGTCGGTGGTAAAGATAACAAGATTCACGTTTTCACTCTCAGTGGTAACAATTTAAC
TGCCAGTCATACTTTAGATAATCATCGTGGTGCTATTACCGATCTTTCATACTCACCATG
TGGTAAATATTTAGCTTCAGGTTGTTCAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGA
AGCCAAATCTAAAGGTTGGGTTAACCATACCGCTCGTATTAATGCTGTCGCTTGGTCTAA
TGATTCTAAATTTGTTGCCTCTGCTTCACTCGATTCTCAAATTTACATTTGGAATGTTGA
AAATCCAACCGCTTCACCAGTTCAAGTTAAAAACTCTCATTTAGGTGGTGTCAATGATGT
TATTTATGGTTCAAACAATGAAATTTTCTCTGCAGGTAATGAAGGTGCTATTAAAATTTG
AATGTATCAAATTAAAAAAAAAT

---NFTGPAHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSG
DVVVAVSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTA
SHTLDNHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSND
SKFVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAGNEGAIKI*m
yqikkk

Frame A:
---pislvqltriklxqlksmvinsllalwmivlksqvslkkpmvkvlv*ivqlklllsl
vmlsllsq*kpfmslkvvksfhkllplgnqpllpsmilkfqsvvkitrftfslsvvti*l
pvil*iiivvllpifhthhvvni*lqvvqivklsfgvvkkpnlkvgltiplvlmlslglm
ilnllpllhsilkftfgmlkiqplhqfklktli*vvsmmlfmvqtmkfslqvmkvllkfe
ciklkkn


Frame B:
---qfhwsssqesnyxn*nqw*sthylryg**c*nlkyl*knlw*kywcr*ssssccflw
*ccrcclnenhlch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfnc
qsyfr*sswcyyrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**
f*icclcftrfsnlhlec*ksnrftsss*klsfrwcq*cylwfkq*nflcr**rcy*nln
vsn*kk


Frame C:
---NFTGPAHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSG
DVVVAVSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTA
SHTLDNHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSND
SKFVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAGNEGAIKI*m
yqikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB378 (CHB378Q) /CSM/CH/CHB3-D/CHB378Q.Seq.d/                       1386   0.0
SFH724 (SFH724Q) /CSM/SF/SFH7-A/SFH724Q.Seq.d/                       1380   0.0
CHB782 (CHB782Q) /CSM/CH/CHB7-D/CHB782Q.Seq.d/                       1380   0.0
CHL844 (CHL844Q) /CSM/CH/CHL8-B/CHL844Q.Seq.d/                       1362   0.0
CHD430 (CHD430Q) /CSM/CH/CHD4-B/CHD430Q.Seq.d/                       1354   0.0
CFF366 (CFF366Q) /CSM/CF/CFF3-C/CFF366Q.Seq.d/                       1352   0.0
CFJ887 (CFJ887Q) /CSM/CF/CFJ8-D/CFJ887Q.Seq.d/                       1350   0.0
CFJ140 (CFJ140Q) /CSM/CF/CFJ1-B/CFJ140Q.Seq.d/                       1348   0.0
SFE564 (SFE564Q) /CSM/SF/SFE5-C/SFE564Q.Seq.d/                       1342   0.0
CFC347 (CFC347Q) /CSM/CF/CFC3-B/CFC347Q.Seq.d/                       1330   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds.  1174   0.0    2
AY040129|AY040129.1 Henotesia turbata cytochrome oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    42   0.87   2
AC121598|AC121598.3 Mus musculus BAC clone RP23-300F10 from chromosome 15, complete sequence.    44   2.7    1
AQ506151|AQ506151.1 RPCI-11-313O8.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-313O8, genomic survey sequence.    44   2.7    1
AQ483217|AQ483217.1 RPCI-11-241P18.TV RPCI-11 Homo sapiens genomic clone RPCI-11-241P18, genomic survey sequence.    44   2.7    1
AC008171|AC008171.3 Homo sapiens clone RP11-326D7, complete sequence.    44   2.7    1
AK124137|AK124137.1 Homo sapiens cDNA FLJ42143 fis, clone TESTI2046100.    40   3.6    2
AC009945|AC009945.2 Homo sapiens BAC clone CTD-2060L22 from 7, complete sequence.    34   6.2    4
AE014303|AE014303.1 Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3 of 3 of the complete sequence.    32   6.3    5
AI273958|AI273958.1 qu90h02.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone IMAGE:1979379 3' similar to contains Alu repetitive element;, mRNA sequence.    32   9.4    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p...   457   e-127
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;...   174   3e-42
(Q9VU68) RecName: Full=Actin-interacting protein 1;          Sho...   140   3e-32
BT064216_1(BT064216|pid:none) Zea mays full-length cDNA clone ZM...   139   7e-32
EU975237_1(EU975237|pid:none) Zea mays clone 485285 stress prote...   139   9e-32
AP002909_14(AP002909|pid:none) Oryza sativa Japonica Group genom...   131   2e-29
CU633455_62(CU633455|pid:none) Podospora anserina genomic DNA ch...   128   2e-28
AC006200_20(AC006200|pid:none) Arabidopsis thaliana chromosome 2...   127   3e-28
(Q9W7F2) RecName: Full=WD repeat-containing protein 1-A; AltName...   120   4e-26
BT002525_1(BT002525|pid:none) Arabidopsis thaliana Unknown prote...   119   7e-26

 psg: 0.69  gvh: 0.40  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHB378 is cyt

>CHB378Z.Seq
NNNNNNNNNNACCAATTTCACTGGTCCAGCTCACAAGAATCAAATTACNTCAATTAAAAT
CAATGGTGATCAACTCATTACTTGCGCTATGGATGATAGTGTTAAAATCTCAAGTATCTC
TAAAAAAACCTATGGTGAAAGTATTGGTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTC
TGGTGATGTTGTCGTTGCTGTCTCAATGAAAACCATTTATGTCATTAAAGGTGGTAAAAT
CGTTTCACAAACTGCTGCCACTTGGGAACCAACCTCTGTTGCCATCAATGATACTGAAGT
TTCAGTCGGTGGTAAAGATAACAAGATTCACGTTTTCACTCTCAGTGGTAACAATTTAAC
TGCCAGTCATACTTTAGATAATCATCGTGGTGCTATTACCGATCTTTCATACTCACCATG
TGGTAAATATTTAGCTTCAGGTTGTTCAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGA
AGCCAAATCTAAAGGTTGGGTTAACCATACCGCTCGTATTAATGCTGTCGCTTGGTCTAA
TGATTCTAAATTTGTTGCCTCTGCTTCACTCGATTCTCAAATTTACATTTGGAATGTTGA
AAATCCAACCGCTTCACCAGTTCAAGTTAAAAACTCTCATTTAGGTGGTGTCAATGATGT
TATTTATGGTTCAAACAATGAAATTTTCTCTGCAGGTAATGAAGGTGCTATTAAAATTTG
AATGTATCAAATTAAAAAAAAAT