CHB325
Library CH
(Link to library)
Clone ID CHB325
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16456-1
Original site URL
Representative seq. ID CHB325P
(Link to Original site)
Representative DNA sequence
>CHB325 (CHB325Q) /CSM/CH/CHB3-B/CHB325Q.Seq.d/
CACTGTTGGCCTACTGGTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAA
ATCATTAATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGT
TAGTCAATTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGG
TACAGGTTATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAATGGATTA
CAGGGTAAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGNCCANAGACAGAAGAT
CGTTGGGCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATT
CNNAATGGTATAAATAXXXXXXXXXXTAATGGTAAATTGAAATTCGCTTCAGCAACTTCA
CTTAGATTCTCCCCACCAGGTTTCAATAGATTATTCAATAATTGGGAAAATTATAAAAGT
AAAATCATCCTTAGAAATCAGGCCATTTCAAATGCAGCTGAATTAATTTCACGTGTTGGT
TGTATCGCTTTAAATACTCCATGTGAAGTTGATATCTATGGTCATGTCAATAGTACCAAT
ACAATGGGTTCAAAAATGTTAAATGGTTTAGGTGGTAGTGGTGAATTCTTAAGAAATTCA
AGAATCTCCATTGTTCACACCTCATCAACTCGTCCAACTAAAACTGATCCACATGGTATT
AGTTGTATCGTTCCTTTCGCCTCTCATATCGATCATACAGAACACGACATTGATATCATT
GTAACCGAGCAAGGTTTAGCTGATATTCGTGGTTTGGCACCTTATGAACGTGCTAAAGTT
ATCATTCAAAATTGTGCTCATCCAATCTATAAACCAATACTCATGGAATACCTTGAAACT
TCTCGTCAAATTTGTTTAAAAAATCATATGGGACATGAACCACATCAATTAGACAAAGCA
TTTAAATTTTATACAAATTTATCTGAAAAAGGTACTATGAAAATTGACAAGTGGTAAATA
ATAAAAATAAAAAATAAAAAATAAAAAATAAATAAATAAATAAAANATTTAAANANANAT
ACATTTNAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
hcwptgfkikda*ncstr**iin*ikn*kkiiik*scyrc*SIDTIFSKWTLCVYGWICR
YRLSKGSTNCIGRPCGKNGLQGKLKMNLFVGASVGPXTEDRWAMLDMIDKRYPHQNGHHI
XNGIN---

---NGKLKFASATSLRFSPPGFNRLFNNWENYKSKIILRNQAISNAAELISRVGCIALNT
PCEVDIYGHVNSTNTMGSKMLNGLGGSGEFLRNSRISIVHTSSTRPTKTDPHGISCIVPF
ASHIDHTEHDIDIIVTEQGLADIRGLAPYERAKVIIQNCAHPIYKPILMEYLETSRQICL
KNHMGHEPHQLDKAFKFYTNLSEKGTMKIDKW*iikiknkk*kink*ikxlxxxtfx


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgfkikda*ncstr**iin*ikn*kkiiik*scyrc*SIDTIFSKWTLCVYGWICR
YRLSKGSTNCIGRPCGKNGLQGKLKMNLFVGASVGPXTEDRWAMLDMIDKRYPHQNGHHI
XNGIN---

---*w*ieirfsnft*ilptrfq*iiq*lgkl*k*nhp*ksghfkcs*inftcwlyrfky
sm*s*ylwscq*yqyngfknvkwfrw*w*ilkkfknlhcshlinssn*n*stwy*lyrsf
rlsyrsyrtrh*yhcnrarfs*yswfgtl*tc*syhsklcssnl*tnthgip*nfssnlf
kksygt*ttsirqsi*ilykfi*kryyen*qvvnnknkk*kiknk*inkxfkxxyixk

Frame B:
tvgllvlklrmhkivqqgsksliesrikrksllskvvtdvsqlipyfqnghyvsmggfag
tgypkvvpialadhvekmdyrvn*k*iyllehqlxxrqkivgqcwi**irdiltkmditf
xmv*i---

---NGKLKFASATSLRFSPPGFNRLFNNWENYKSKIILRNQAISNAAELISRVGCIALNT
PCEVDIYGHVNSTNTMGSKMLNGLGGSGEFLRNSRISIVHTSSTRPTKTDPHGISCIVPF
ASHIDHTEHDIDIIVTEQGLADIRGLAPYERAKVIIQNCAHPIYKPILMEYLETSRQICL
KNHMGHEPHQLDKAFKFYTNLSEKGTMKIDKW*iikiknkk*kink*ikxlxxxtfx

Frame C:
llaywf*n*gciklfnkvvnh*lnqelkenhy*vkllqmlvn*yhifkmdimclwvdlqv
qviqr*yqlhwqtmwkkwitg*ikneficwsiswxxdrrslgnvgydr*eisspkwtshs
xwyk---

---mvn*nslqqlhldsphqvsidysiigkiikvkssleirpfqmqln*fhvlvvsl*il
hvklismvmsivpiqwvqkc*mv*vvvvns*eiqesplftphqlvqlklihmvlvvsfls
plisiiqnttlisl*pskv*lifvvwhlmnvlklsfkivliqsinqyswntlkllvkfv*
kiiwdmnhin*tkhlnfiqiylkkvl*kltsgk**k*kiknkk*ink*xi*xxihxk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHB325 (CHB325Q) /CSM/CH/CHB3-B/CHB325Q.Seq.d/ 1927 0.0
SFI539 (SFI539Q) /CSM/SF/SFI5-B/SFI539Q.Seq.d/ 1237 0.0
FC-AL01 (FC-AL01Q) /CSM/FC/FC-AL/FC-AL01Q.Seq.d/ 1237 0.0
FC-201 (FC-201Q) /CSM/CG/CG-FC/FC-201Q.Seq.d/ 1237 0.0
CFK488 (CFK488Q) /CSM/CF/CFK4-D/CFK488Q.Seq.d/ 1237 0.0
CFK307 (CFK307Q) /CSM/CF/CFK3-A/CFK307Q.Seq.d/ 1237 0.0
CFI694 (CFI694Q) /CSM/CF/CFI6-D/CFI694Q.Seq.d/ 1237 0.0
CFH208 (CFH208Q) /CSM/CF/CFH2-A/CFH208Q.Seq.d/ 1205 0.0
AFN385 (AFN385Q) /CSM/AF/AFN3-D/AFN385Q.Seq.d/ 1205 0.0
CFF387 (CFF387Q) /CSM/CF/CFF3-D/CFF387Q.Seq.d/ 1197 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL409684|AL409684.1 T7 end of clone XAV0AA001D05 of library XAV0AA from strain CBS 379 of Saccharomyces exiguus. 62 7e-11 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 7e-05 20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 0.001 12
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 0.002 15
BX842645|BX842645.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 4/4. 36 0.004 12
AL139189|AL139189.14 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-94F16. 34 0.007 7
AL160471|AL160471.5 Human chromosome 14 DNA sequence BAC R-304L20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 44 0.032 5
AC122580|AC122580.5 Rattus norvegicus clone CH230-29H2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.034 8
AC073928|AC073928.5 Homo sapiens BAC clone RP11-745P9 from 2, complete sequence. 34 0.042 7
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 30 0.065 20
dna update 2004. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K91) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 387 e-106
AM920427_313(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 265 2e-69
AP007151_504(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 263 8e-69
A36316(A36316) acu-8 protein - Neurospora crassa &M31521_1(M315... 253 8e-66
CU633453_78(CU633453|pid:none) Podospora anserina genomic DNA ch... 251 4e-65
D89222_1(D89222|pid:none) Schizosaccharomyces pombe mRNA, partia... 248 3e-64
(Q9UUJ9) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 247 4e-64
(Q6FPF3) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 244 5e-63
AE016819_253(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 241 4e-62
(Q754Q2) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 241 4e-62
protein update 2009. 3.29
PSORT

psg: 0.91 gvh: 0.43 alm: 0.40 top: 0.73 tms: 0.00 mit: 0.31 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHB325 is nuc

5' end seq. ID CHB325F
5' end seq.
>CHB325F.Seq
CACTGTTGGCCTACTGGTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAA
ATCATTAATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGT
TAGTCAATTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGG
TACAGGTTATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAATGGATTA
CAGGGTAAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGNCCANAGACAGAAGAT
CGTTGGGCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATT
CNNAATGGTATAAATANNNNNNNNNN
Length of 5' end seq. 386
3' end seq. ID CHB325Z
3' end seq.
>CHB325Z.Seq
NNNNNNNNNNTAATGGTAAATTGAAATTCGCTTCAGCAACTTCACTTAGATTCTCCCCAC
CAGGTTTCAATAGATTATTCAATAATTGGGAAAATTATAAAAGTAAAATCATCCTTAGAA
ATCAGGCCATTTCAAATGCAGCTGAATTAATTTCACGTGTTGGTTGTATCGCTTTAAATA
CTCCATGTGAAGTTGATATCTATGGTCATGTCAATAGTACCAATACAATGGGTTCAAAAA
TGTTAAATGGTTTAGGTGGTAGTGGTGAATTCTTAAGAAATTCAAGAATCTCCATTGTTC
ACACCTCATCAACTCGTCCAACTAAAACTGATCCACATGGTATTAGTTGTATCGTTCCTT
TCGCCTCTCATATCGATCATACAGAACACGACATTGATATCATTGTAACCGAGCAAGGTT
TAGCTGATATTCGTGGTTTGGCACCTTATGAACGTGCTAAAGTTATCATTCAAAATTGTG
CTCATCCAATCTATAAACCAATACTCATGGAATACCTTGAAACTTCTCGTCAAATTTGTT
TAAAAAATCATATGGGACATGAACCACATCAATTAGACAAAGCATTTAAATTTTATACAA
ATTTATCTGAAAAAGGTACTATGAAAATTGACAAGTGGTAAATAATAAAAATAAAAAATA
AAAAATAAAAAATAAATAAATAAATAAAANATTTAAANANANATACATTTNAAAA
Length of 3' end seq. 715
Connected seq. ID CHB325P
Connected seq.
>CHB325P.Seq
CACTGTTGGCCTACTGGTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAA
ATCATTAATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGT
TAGTCAATTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGG
TACAGGTTATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAATGGATTA
CAGGGTAAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGNCCANAGACAGAAGAT
CGTTGGGCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATT
CNNAATGGTATAAATA----------TAATGGTAAATTGAAATTCGCTTCAGCAACTTCA
CTTAGATTCTCCCCACCAGGTTTCAATAGATTATTCAATAATTGGGAAAATTATAAAAGT
AAAATCATCCTTAGAAATCAGGCCATTTCAAATGCAGCTGAATTAATTTCACGTGTTGGT
TGTATCGCTTTAAATACTCCATGTGAAGTTGATATCTATGGTCATGTCAATAGTACCAAT
ACAATGGGTTCAAAAATGTTAAATGGTTTAGGTGGTAGTGGTGAATTCTTAAGAAATTCA
AGAATCTCCATTGTTCACACCTCATCAACTCGTCCAACTAAAACTGATCCACATGGTATT
AGTTGTATCGTTCCTTTCGCCTCTCATATCGATCATACAGAACACGACATTGATATCATT
GTAACCGAGCAAGGTTTAGCTGATATTCGTGGTTTGGCACCTTATGAACGTGCTAAAGTT
ATCATTCAAAATTGTGCTCATCCAATCTATAAACCAATACTCATGGAATACCTTGAAACT
TCTCGTCAAATTTGTTTAAAAAATCATATGGGACATGAACCACATCAATTAGACAAAGCA
TTTAAATTTTATACAAATTTATCTGAAAAAGGTACTATGAAAATTGACAAGTGGTAAATA
ATAAAAATAAAAAATAAAAAATAAAAAATAAATAAATAAATAAAANATTTAAANANANAT
ACATTTNAAAA
Length of connected seq. 1081
Full length Seq ID -
Full length Seq. -
Length of full length seq. -