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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF341
Library AF
(Link to library)
Clone ID AFF341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID AFF341P
(Link to Original site)
Representative DNA sequence 
>AFF341 (AFF341Q) /CSM/AF/AFF3-B/AFF341Q.Seq.d/
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXCTGATCATTGTG
ATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAG
ATNCTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCAC
CTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTG
AAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTG
TTACCCCANCTGTTACTNCAACTGTTACCCC
sequence update 2001. 6. 2
Translated Amino Acid sequence 
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---DHCDPAIGCYYDKFDNCDACNAVDXCITNDLCFPRECNPRGNPPCLINPINCTSTDP
CIFSYCENGVCIPTYICTPTPSVTPTVTPXVTXTVT
Translated Amino Acid sequence (All Frames) 
Frame A:
i*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---liiviql*vvimisliivmhvml*xlvlqmiyasqgnviqegthlv**tllivqali
haffhivkmvyvfqhtfvlqlhl*lqllpxlllqllp

Frame B:
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---*sl*ssyrlll**v**l*cm*ccrxlyyk*fmlpkgm*skreptlfnkpy*lykh*s
mhffil*kwcmysnihlysnsicnsncypxcyxncyp

Frame C:
mni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---DHCDPAIGCYYDKFDNCDACNAVDXCITNDLCFPRECNPRGNPPCLINPINCTSTDP
CIFSYCENGVCIPTYICTPTPSVTPTVTPXVTXTVT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/                        543   e-154
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/                        543   e-154
SFJ353 (SFJ353Q) /CSM/SF/SFJ3-C/SFJ353Q.Seq.d/                        543   e-154
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        543   e-154
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        543   e-154
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        543   e-154
CHD166 (CHD166Q) /CSM/CH/CHD1-C/CHD166Q.Seq.d/                        543   e-154
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        543   e-154
CHC347 (CHC347Q) /CSM/CH/CHC3-B/CHC347Q.Seq.d/                        543   e-154
CHC113 (CHC113Q) /CSM/CH/CHC1-A/CHC113Q.Seq.d/                        543   e-154
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   1e-05  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-05  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-04  12
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   2e-04  10
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   3e-04  2
AF220352|AF220352.1 Plasmodium falciparum 41-3 antigen gene, complete cds.    46   6e-04  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   6e-04  10
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34   8e-04  9
M59961|M59961.1 P.falciparum blood stage antigen (41-3) gene, complete cds.    46   0.001  2
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    40   0.001  12
dna update 2004. 3.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                177   1e-43
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 64   1e-09
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 56   4e-07
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 51   1e-05
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 42   0.006
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 41   0.014
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 38   0.12
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    37   0.16
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 37   0.16
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr...    37   0.27
protein update 2009. 4.19
PSORT 

 psg: 0.52  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for AFF341 is cyt
5' end seq. ID AFF341F
5' end seq. 
>AFF341F.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 158
3' end seq. ID AFF341Z
3' end seq. 
>AFF341Z.Seq
----------CTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAAT
TGTGATGCATGTAATGCTGTAGATNCTTGTATTACAAATGATTTATGCTTCCCAAGGGAA
TGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGAT
CCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCA
ACTCCATCTGTAACTCCAACTGTTACCCCANCTGTTACTNCAACTGTTACCCC
Length of 3' end seq. 283
Connected seq. ID AFF341P
Connected seq. 
>AFF341P.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------CTGATCATTGTG
ATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAG
ATNCTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCAC
CTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTG
AAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTG
TTACCCCANCTGTTACTNCAACTGTTACCCC
Length of connected seq. 441
Full length Seq ID -
Full length Seq. -
Length of full length seq. -