>CHB310 (CHB310Q) /CSM/CH/CHB3-A/CHB310Q.Seq.d/
XXXXXXXXXXTTGGATTTATAAATATCAGCATATATACGCCCCCATTTTTGTATGGTCTA
TATTCGATTAAATATAGATTATGTGATTATAGTGTTTTCACAGAGGGTTCAATTGGAAGG
GTTAGAACTGCAAATGCTTCAAATTTTGAAATCATCTCTTTTATCATTGGTAAATTGGTT
TTCATTGTTTTTAGATTCATCATACCATTACAATATCATAGTTTAGTAAACTTGTTAACT
TATTTCTTTATCGCTGAATTCTTTTTTGGTCTTTATTTATCCTTTGGTTTCCAAGTTAGT
CATTCTGCTGATAATTTAAAAATTGTTGCAACAAGTGTAAATGAAAATGATGAACCAACA
AATGTTGATGAAGATTGGGCAATTCATCAAATTAAAACTACTCAAGATTATGGTATTAAT
TCATATATGTGTTTATTTTTTTCGGGTGGTGTAAATTTACAAGTTGTTCATCACTTGTTT
CCATCAATTTCACAAGAATACTATGGTGAATTAGTACCAATTATTAAAAAGGTTTGTGAT
GAGTATGATGTACATTATAATATTCAACCAACATTTTATGCTGCTTTT

---GFINISIYTPPFLYGLYSIKYRLCDYSVFTEGSIGRVRTANASNFEIISFIIGKLVF
IVFRFIIPLQYHSLVNLLTYFFIAEFFFGLYLSFGFQVSHSADNLKIVATSVNENDEPTN
VDEDWAIHQIKTTQDYGINSYMCLFFSGGVNLQVVHHLFPSISQEYYGELVPIIKKVCDE
YDVHYNIQPTFYAAF

Frame A:
---wiykyqhiyapifvwsifd*i*im*l*cfhrgfnwkg*nckcfkf*nhlfyhw*igf
hcf*ihhtitis*fsklvnlflyr*ilfwslfilwfps*sfc**fknccnkck*k**tnk
c**rlgnssn*nysrlwy*fiyvfiffgwckftscsslvsinftrilw*istny*kgl**
v*ctl*ystnilccf


Frame B:
---GFINISIYTPPFLYGLYSIKYRLCDYSVFTEGSIGRVRTANASNFEIISFIIGKLVF
IVFRFIIPLQYHSLVNLLTYFFIAEFFFGLYLSFGFQVSHSADNLKIVATSVNENDEPTN
VDEDWAIHQIKTTQDYGINSYMCLFFSGGVNLQVVHHLFPSISQEYYGELVPIIKKVCDE
YDVHYNIQPTFYAAF


Frame C:
---dl*isayirphfcmvyirlnidyviivfsqrvqleglelqmlqilkssllslvnwfs
lfldssyhyniiv**tc*lislslnsflvfiyplvsklvillii*kllqqv*mkmmnqqm
lmkigqfiklkllkimvlihicvyffrvv*iyklfitcfhqfhkntmvn*yqllkrfvms
mmyiiifnqhfmll

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB310 (CHB310Q) /CSM/CH/CHB3-A/CHB310Q.Seq.d/                       1104   0.0
AFK718 (AFK718Q) /CSM/AF/AFK7-A/AFK718Q.Seq.d/                       1104   0.0
VHC494 (VHC494Q) /CSM/VH/VHC4-D/VHC494Q.Seq.d/                       1072   0.0
VFM167 (VFM167Q) /CSM/VF/VFM1-C/VFM167Q.Seq.d/                        634   0.0
SFJ777 (SFJ777Q) /CSM/SF/SFJ7-D/SFJ777Q.Seq.d/                        446   e-124
VSH813 (VSH813Q) /CSM/VS/VSH8-A/VSH813Q.Seq.d/                         70   4e-11
VSF803 (VSF803Q) /CSM/VS/VSF8-A/VSF803Q.Seq.d/                         70   4e-11
VSF218 (VSF218Q) /CSM/VS/VSF2-A/VSF218Q.Seq.d/                         70   4e-11
VSC833 (VSC833Q) /CSM/VS/VSC8-B/VSC833Q.Seq.d/                         70   4e-11
VFO589 (VFO589Q) /CSM/VF/VFO5-D/VFO589Q.Seq.d/                         70   4e-11

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB022097|AB022097.1 Dictyostelium discoideum FadB mRNA for delta 5 fatty acid desaturase, complete cds.    68   9e-18  3
BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants.    70   3e-17  4
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids.    70   3e-17  4
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids.    70   3e-17  4
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds.    70   7e-14  4
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    40   5e-04  9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.002  12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   0.005  13
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.039  10
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    34   0.041  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   375   e-106
(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   213   5e-56
(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   189   2e-49
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...   125   1e-27
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...   124   2e-27
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a...   117   5e-26
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...   112   7e-24
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   108   8e-23
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001.    108   1e-22
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   104   2e-21

 psg: 0.89  gvh: 0.51  alm: 0.23  top: 0.63  tms: 0.07  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHB310 is nuc

>CHB310Z.Seq
NNNNNNNNNNTTGGATTTATAAATATCAGCATATATACGCCCCCATTTTTGTATGGTCTA
TATTCGATTAAATATAGATTATGTGATTATAGTGTTTTCACAGAGGGTTCAATTGGAAGG
GTTAGAACTGCAAATGCTTCAAATTTTGAAATCATCTCTTTTATCATTGGTAAATTGGTT
TTCATTGTTTTTAGATTCATCATACCATTACAATATCATAGTTTAGTAAACTTGTTAACT
TATTTCTTTATCGCTGAATTCTTTTTTGGTCTTTATTTATCCTTTGGTTTCCAAGTTAGT
CATTCTGCTGATAATTTAAAAATTGTTGCAACAAGTGTAAATGAAAATGATGAACCAACA
AATGTTGATGAAGATTGGGCAATTCATCAAATTAAAACTACTCAAGATTATGGTATTAAT
TCATATATGTGTTTATTTTTTTCGGGTGGTGTAAATTTACAAGTTGTTCATCACTTGTTT
CCATCAATTTCACAAGAATACTATGGTGAATTAGTACCAATTATTAAAAAGGTTTGTGAT
GAGTATGATGTACATTATAATATTCAACCAACATTTTATGCTGCTTTT