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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB241
Library CH
(Link to library)
Clone ID CHB241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15507-1
Original site URL
Representative seq. ID CHB241P
(Link to Original site)
Representative DNA sequence 
>CHB241 (CHB241Q) /CSM/CH/CHB2-B/CHB241Q.Seq.d/
CACTGTTGGCCTACTGGAAAGAATGCTGATATGATTGATATTAATGATGAAAATAATAAT
AATAATAACAAATCAAAAGAAAAAGNAAAAGGAAAGAGAACGTGAAAAAGAAAGAGAAAA
AGAAAAGGAAAGAGAAAAGGAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAA
AGAAAAGGANAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAG
AGAACGTGAAAAAGAACGTGAACGTGAAAGAGAACGNGAACGTGAGAGAGAACGNGAACG
CGAANGAGAAAAAGAAAATNAANCCAGACAAGGNANGAGAACGTGAACGTNAGAGAGAXX
XXXXXXXXATAGTGATAGATAATGATTGATANTGATAGTNATGATAGTAGTAGAAGANAG
CCAGGNTAATAGAAATGAAAGGAATGATAGTCGTGAAAGACAAGACGCTAGAGATAATCG
TAAAGATCAGCAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAAAGAAAAGGA
AAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAGAGAACGTGA
AAAAGAACGTGAACGTGAAAGAGAACGTGAACGTGAGAGAGAACGTGAACGTGAAAGAGA
AAAAGAAAAAGAAAAAGAAAAGGAAAGAGAACGTGTAACGTGNAGAGAGAAAGAGAACGT
GAGCGTNAACGNNAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywkec*yd*y***k*****QIKRKXKRKENVKKKEKKKRKEKRKEKENVKKKEKKKK
KRXENVKERENVREKKKEIENVKKNVNVKENXNVRENXNAXEKKKXXPDKXXERERXR--
-

---IVIDND*x**x****kxarxiemkgmivvkdktleiivkiskekenvkkkekkkkkr
kenvkerenvrekkkeienvkknvnvkenvnvrenvnvkekkkkkkkrkenv*rxerkrt
*axtxk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgknadmidindennnnnnkskekxkgkrt*krkrkrkgkrkgkrkrt*krkrkrk
rkgxrt*krert*erkrkr*rt*krt*t*krtxt*ertxtrxrkrkxxqtrxenvnvre-
--

---IVIDND*x**x****kxarxiemkgmivvkdktleiivkiskekenvkkkekkkkkr
kenvkerenvrekkkeienvkknvnvkenvnvrenvnvkekkkkkkkrkenv*rxerkrt
*axtxk

Frame B:
tvgllermli*lilmmkiiiiitnqkkkxkererekerekekerekerererekerekek
ekxrerererererekerdrerekererererererererexekenxxrqgxrt*txer-
--

---***imidxdsxdssrrxpg**k*ke**s*ktrr*r*s*rsakrkrt*krkrkrkrkg
krt*krert*erkrkr*rt*krt*t*krt*t*ert*t*krkrkrkrkgkrtcnvxrerer
erxrx

Frame C:
llaywkec*yd*y***k*****QIKRKXKRKENVKKKEKKKRKEKRKEKENVKKKEKKKK
KRXENVKERENVREKKKEIENVKKNVNVKENXNVRENXNAXEKKKXXPDKXXERERXR--
-

---sdr**lixivmivvexsqxnrnerndsrerqdardnrkdqqrererekerekekeke
rerererererekerdrerekerererererererererekekekekerervtxrekenv
svnxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB241 (CHB241Q) /CSM/CH/CHB2-B/CHB241Q.Seq.d/                        232   6e-60
CHR503 (CHR503Q) /CSM/CH/CHR5-A/CHR503Q.Seq.d/                        111   2e-23
VHI287 (VHI287Q) /CSM/VH/VHI2-D/VHI287Q.Seq.d/                        105   9e-22
VHB745 (VHB745Q) /CSM/VH/VHB7-B/VHB745Q.Seq.d/                         50   5e-05
SLB668 (SLB668Q) /CSM/SL/SLB6-C/SLB668Q.Seq.d/                         50   5e-05
VHM375 (VHM375Q) /CSM/VH/VHM3-D/VHM375Q.Seq.d/                         48   2e-04
SFA762 (SFA762Q) /CSM/SF/SFA7-C/SFA762Q.Seq.d/                         44   0.003
SFG410 (SFG410Q) /CSM/SF/SFG4-A/SFG410Q.Seq.d/                         42   0.012
VHM636 (VHM636Q) /CSM/VH/VHM6-B/VHM636Q.Seq.d/                         40   0.047
VHH421 (VHH421Q) /CSM/VH/VHH4-A/VHH421Q.Seq.d/                         40   0.047
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BD186858|BD186858.1 Nucleic acids isolated from neuroblastoma.     44   3.2    1
CR651354|CR651354.1 Tetraodon nigroviridis full-length cDNA.       44   3.2    1
BX159293|BX159293.1 Danio rerio genomic clone DKEY-125I24, genomic survey sequence.    42   12     1
CR719347|CR719347.1 Tetraodon nigroviridis full-length cDNA.       42   12     1
BD100872|BD100872.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    42   12     1
BD020934|BD020934.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    42   12     1
BX521176|BX521176.1 RZPD Mus musculus cDNA clone IMAGp998K165621 = IMAGE:2270343 5' EST.    42   12     1
BX512956|BX512956.1 RZPD Mus musculus cDNA clone IMAGp998C125701 = IMAGE:2300867 5' EST.    42   12     1
BM755023|BM755023.1 K-EST0032675 S10SNU1 Homo sapiens cDNA clone S10SNU1-11-E02 5', mRNA sequence.    42   12     1
BD101196|BD101196.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    42   12     1
dna update 2004. 9.14
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 152,484,597
protein update 2009. 3.29
PSORT 

 psg: 0.19  gvh: -0.20  alm: 0.78  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 1.56  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHB241 is nuc
5' end seq. ID CHB241F
5' end seq. 
>CHB241F.Seq
CACTGTTGGCCTACTGGAAAGAATGCTGATATGATTGATATTAATGATGAAAATAATAAT
AATAATAACAAATCAAAAGAAAAAGNAAAAGGAAAGAGAACGTGAAAAAGAAAGAGAAAA
AGAAAAGGAAAGAGAAAAGGAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAA
AGAAAAGGANAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAG
AGAACGTGAAAAAGAACGTGAACGTGAAAGAGAACGNGAACGTGAGAGAGAACGNGAACG
CGAANGAGAAAAAGAAAATNAANCCAGACAAGGNANGAGAACGTGAACGTNAGAGAGANN
NNNNNNNN
Length of 5' end seq. 368
3' end seq. ID CHB241Z
3' end seq. 
>CHB241Z.Seq
NNNNNNNNNNATAGTGATAGATAATGATTGATANTGATAGTNATGATAGTAGTAGAAGAN
AGCCAGGNTAATAGAAATGAAAGGAATGATAGTCGTGAAAGACAAGACGCTAGAGATAAT
CGTAAAGATCAGCAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAAAGAAAAG
GAAAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAGAGAACGT
GAAAAAGAACGTGAACGTGAAAGAGAACGTGAACGTGAGAGAGAACGTGAACGTGAAAGA
GAAAAAGAAAAAGAAAAAGAAAAGGAAAGAGAACGTGTAACGTGNAGAGAGAAAGAGAAC
GTGAGCGTNAACGNNAAAG
Length of 3' end seq. 379
Connected seq. ID CHB241P
Connected seq. 
>CHB241P.Seq
CACTGTTGGCCTACTGGAAAGAATGCTGATATGATTGATATTAATGATGAAAATAATAAT
AATAATAACAAATCAAAAGAAAAAGNAAAAGGAAAGAGAACGTGAAAAAGAAAGAGAAAA
AGAAAAGGAAAGAGAAAAGGAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAA
AGAAAAGGANAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAG
AGAACGTGAAAAAGAACGTGAACGTGAAAGAGAACGNGAACGTGAGAGAGAACGNGAACG
CGAANGAGAAAAAGAAAATNAANCCAGACAAGGNANGAGAACGTGAACGTNAGAGAGA--
--------ATAGTGATAGATAATGATTGATANTGATAGTNATGATAGTAGTAGAAGANAG
CCAGGNTAATAGAAATGAAAGGAATGATAGTCGTGAAAGACAAGACGCTAGAGATAATCG
TAAAGATCAGCAAAGAGAAAGAGAACGTGAAAAAGAAAGAGAAAAAGAAAAAGAAAAGGA
AAGAGAACGTGAAAGAGAGAGAGAACGTGAGAGAGAAAAAGAAAGAGATAGAGAACGTGA
AAAAGAACGTGAACGTGAAAGAGAACGTGAACGTGAGAGAGAACGTGAACGTGAAAGAGA
AAAAGAAAAAGAAAAAGAAAAGGAAAGAGAACGTGTAACGTGNAGAGAGAAAGAGAACGT
GAGCGTNAACGNNAAAG
Length of connected seq. 727
Full length Seq ID -
Full length Seq. -
Length of full length seq. -