CHB229
Library CH
(Link to library)
Clone ID CHB229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16447-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHB229 (CHB229Q) /CSM/CH/CHB2-B/CHB229Q.Seq.d/
XXXXXXXXXXACCATACTTCCAAAATCCATTGGATTTGGGTGCCGATATCGTTATGCACT
CTGTCACCAAATATATCAATGGTCATAGTGATTGCGTTATGGGTGTTTTGGCAACAAACA
ACGATGAACTCTACGCCAAGCTTAAATTCCTCCAAAATAGTATTGGTGCCGTGCCATCAC
CATTCGATTGTTTCCTCGCCCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTC
ATCAAAAGAATGCTTTCGCCATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAG
TCATCTATCCAGGTCTCCCATCTCATCCACAACATGAGATTTGCAAACGTCAAATGAAAG
GTTATGGTGGTATGGTTGTTTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCT
TGGAGAATATTAAACTCTTTGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTG
AACTTCCATCAGTTATGACTCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTA
TCTCTGATACTTTAATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTG
ATATCTCTCAAGCTTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAAT
AAATAAATAAATAATAAAAATATTGTAATAAAGTTTTAAAATTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---PYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSP
FDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKG
YGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGI
SDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kycnkvlkl


Translated Amino Acid sequence (All Frames)
Frame A:
---PYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSP
FDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKG
YGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGI
SDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kycnkvlkl


Frame B:
---htskihwiwvpislctlspnismvivialwvfwqqttmnstpslnsskivlvpchhh
sivsspfvv*rlstfvwklikrmlspfaisskniqklkessiqvshlihnmrfanvk*kv
mvvwlfsllkvqsikadlswrilnsllllnl*vvsnl*lnfhql*ltqvfqlkkelnsvs
lil*fvyplvlkilmif*lislkl*invkkikkikn*knk*innknivikf*n


Frame C:
---ilpksigfgcryryalchqiyqws**lrygcfgnkqr*tlrqa*ippk*ywcraiti
rlfprpswfedsprsygssskecfrhlqfprktsks*kshlsrspisstt*dlqtsnerl
wwygcflc*rfnrskqiflgey*tlcsc*ifrwcrifn*tsisydsrkcss*rks*tryl
*yfnsfirwy*ry**sfs*ylssfr*mlkklkklkikkink*iikil**sfki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN251 (VFN251Q) /CSM/VF/VFN2-C/VFN251Q.Seq.d/ 1219 0.0
VFN238 (VFN238Q) /CSM/VF/VFN2-B/VFN238Q.Seq.d/ 1219 0.0
VFL833 (VFL833Q) /CSM/VF/VFL8-B/VFL833Q.Seq.d/ 1219 0.0
VFK675 (VFK675Q) /CSM/VF/VFK6-D/VFK675Q.Seq.d/ 1219 0.0
VFJ246 (VFJ246Q) /CSM/VF/VFJ2-B/VFJ246Q.Seq.d/ 1219 0.0
VFI853 (VFI853Q) /CSM/VF/VFI8-C/VFI853Q.Seq.d/ 1219 0.0
VFI727 (VFI727Q) /CSM/VF/VFI7-B/VFI727Q.Seq.d/ 1219 0.0
VFI111 (VFI111Q) /CSM/VF/VFI1-A/VFI111Q.Seq.d/ 1219 0.0
VFG658 (VFG658Q) /CSM/VF/VFG6-C/VFG658Q.Seq.d/ 1219 0.0
VFF185 (VFF185Q) /CSM/VF/VFF1-D/VFF185Q.Seq.d/ 1219 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP004596|AP004596.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 4/13. 56 7e-04 1
BQ790411|BQ790411.1 Mosquito-WH1-H02.b.ab1 posterior midgut #1 (PMG1) Aedes aegypti cDNA 5', mRNA sequence. 48 0.007 2
CB404981|CB404981.1 OSTR034E8_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 52 0.010 1
U58758|U58758.2 Caenorhabditis elegans cosmid ZK1127, complete sequence. 52 0.010 1
BQ125060|BQ125060.1 pb31b09.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to SW:CGL_CAEEL P55216 PUTATIVE CYSTATHIONINE GAMMA-LYASE ;, mRNA sequence. 52 0.010 1
BJ104383|BJ104383.1 Caenorhabditis elegans cDNA clone:yk1061b03 : 5' end, single read. 52 0.010 1
AU210889|AU210889.1 Caenorhabditis elegans cDNA clone:yk766b01 : 3' end, single read. 52 0.010 1
BJ132004|BJ132004.1 Caenorhabditis elegans cDNA clone:yk1061b03 : 3' end, single read. 52 0.010 1
CK199022|CK199022.1 FGAS007512 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum cDNA, mRNA sequence. 36 0.11 2
AE006311|AE006311.1 Lactococcus lactis subsp. lactis IL1403 section 73 of 218 of the complete genome. 48 0.16 1
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55DV9) RecName: Full=Cystathionine gamma-lyase; EC=4.... 412 e-114
BC082653_1(BC082653|pid:none) Xenopus laevis hypothetical LOC494... 282 8e-75
EU315111_1(EU315111|pid:none) Oncorhynchus mykiss cystathionine ... 281 2e-74
(Q8VCN5) RecName: Full=Cystathionine gamma-lyase; EC=4.... 280 3e-74
BC067624_1(BC067624|pid:none) Danio rerio cystathionase (cystath... 280 3e-74
(P18757) RecName: Full=Cystathionine gamma-lyase; EC=4.... 279 5e-74
(Q60HG7) RecName: Full=Cystathionine gamma-lyase; EC=4.... 278 1e-73
(P55216) RecName: Full=Putative cystathionine gamma-lyase; ... 277 2e-73
BC151523_1(BC151523|pid:none) Bos taurus cystathionase (cystathi... 277 2e-73
(Q58DW2) RecName: Full=Cystathionine gamma-lyase; EC=4.... 275 1e-72
protein update 2009. 5.17
PSORT

psg: 0.75 gvh: 0.50 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for CHB229 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHB229Z
3' end seq.
>CHB229Z.Seq
NNNNNNNNNNACCATACTTCCAAAATCCATTGGATTTGGGTGCCGATATCGTTATGCACT
CTGTCACCAAATATATCAATGGTCATAGTGATTGCGTTATGGGTGTTTTGGCAACAAACA
ACGATGAACTCTACGCCAAGCTTAAATTCCTCCAAAATAGTATTGGTGCCGTGCCATCAC
CATTCGATTGTTTCCTCGCCCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTC
ATCAAAAGAATGCTTTCGCCATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAG
TCATCTATCCAGGTCTCCCATCTCATCCACAACATGAGATTTGCAAACGTCAAATGAAAG
GTTATGGTGGTATGGTTGTTTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCT
TGGAGAATATTAAACTCTTTGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTG
AACTTCCATCAGTTATGACTCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTA
TCTCTGATACTTTAATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTG
ATATCTCTCAAGCTTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAAT
AAATAAATAAATAATAAAAATATTGTAATAAAGTTTTAAAATTA
Length of 3' end seq. 704
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -