CHB216
Library CH
(Link to library)
Clone ID CHB216
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHB216 (CHB216Q) /CSM/CH/CHB2-A/CHB216Q.Seq.d/
XXXXXXXXXXGGAGACCATATCCACCAGTTTGTAGAACTAGATGTCCAGAAGGTCATGAA
TGTAAAGTTGATGAATGGGGTAAAGAATGTTGCGTAAAGATCAAATGTGATGATATTTGT
GACTTGCGTTGTCCAAAGGGTCATGAATGCAAGATCAAACATGATGGTAGTAAATGCTGT
GTCCGTTCATGGAGACCAAGACCACATAAACCACATCCACGTCCACCAATCTGCAGATTA
AGATGTCCACCAGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAA
AAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAA
CATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAAT
TCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCA
ACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGAT
GGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGAT
TTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAATT
ACAACCTTTAATCGCTTGTAAAGGTGAAGGATTAGAACAAGGAATTAATTGGTTATCTGA
TTGTTTACGTAAAAATGCAAGAACAATTAAAAATCAGATTTTTAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---RPYPPVCRTRCPEGHECKVDEWGKECCVKIKCDDICDLRCPKGHECKIKHDGSKCCV
RSWRPRPHKPHPRPPICRLRCPPGHECKHDEHGKECCVKKRHHDRCDLKCKRGYECKIKH
DGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDG
VKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPITTFNRL*r*rirtrn*lvi*l
ft*kcknn*ksdf*


Translated Amino Acid sequence (All Frames)
Frame A:
---etistsl*n*msrrs*m*s**mg*rmlrkdqm**yl*lalskgs*mqdqt*w**mlc
pfmetktt*ttststnlqikmstrs*mqt**tw*rmlr*ktss**m*pqm*erl*m*nqt
*wlqmlcqensketml*tkfmcqr*kmcchqrqnhlcktnl**yslssklplhmw**n*w
ckmcsrl*eskm**crmsrfp*mc*ktwwylkl*i*stnynl*slvkvkd*nkeligyli
vyvkmqeqlkirfl


Frame B:
---RPYPPVCRTRCPEGHECKVDEWGKECCVKIKCDDICDLRCPKGHECKIKHDGSKCCV
RSWRPRPHKPHPRPPICRLRCPPGHECKHDEHGKECCVKKRHHDRCDLKCKRGYECKIKH
DGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDG
VKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPITTFNRL*r*rirtrn*lvi*l
ft*kcknn*ksdf*


Frame C:
---dhihqfveldvqkvmnvklmngvknva*rsnvmifvtcvvqrvmnarsnmmvvnavs
vhgdqdhinhihvhqsad*dvhqvmnanmmnmvknvalknvimidvtsnvrevmnvksnm
mapnvvsrelqrdhvvnqihvpemknvlppktesfv*nqlviilvvlqitiayvviklmv
*nvfqivrkqdvmmsnvqisidvlkdvvvs*vvnlihqlqpliackgegleqginwlsdc
lrknartiknqifk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHB216 (CHB216Q) /CSM/CH/CHB2-A/CHB216Q.Seq.d/ 1499 0.0
CHD840 (CHD840Q) /CSM/CH/CHD8-B/CHD840Q.Seq.d/ 1285 0.0
SLA444 (SLA444Q) /CSM/SL/SLA4-B/SLA444Q.Seq.d/ 1279 0.0
CFA415 (CFA415Q) /CSM/CF/CFA4-A/CFA415Q.Seq.d/ 1277 0.0
SFG208 (SFG208Q) /CSM/SF/SFG2-A/SFG208Q.Seq.d/ 1227 0.0
CFK215 (CFK215Q) /CSM/CF/CFK2-A/CFK215Q.Seq.d/ 1195 0.0
AFG670 (AFG670Q) /CSM/AF/AFG6-C/AFG670Q.Seq.d/ 1191 0.0
AFJ354 (AFJ354Q) /CSM/AF/AFJ3-C/AFJ354Q.Seq.d/ 1183 0.0
CFC496 (CFC496Q) /CSM/CF/CFC4-D/CFC496Q.Seq.d/ 1164 0.0
CFE821 (CFE821Q) /CSM/CF/CFE8-A/CFE821Q.Seq.d/ 1148 0.0

own update 2002.11.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 1285 0.0 2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 1285 0.0 2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 1285 0.0 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 1277 0.0 7
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 448 e-122 2
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 66 4e-16 4
AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 66 3e-14 4
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 66 4e-14 4
AC139189|AC139189.1 Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence. 40 0.084 3
AC009063|AC009063.8 Homo sapiens chromosome 16 clone RP11-298D21, complete sequence. 48 0.18 1
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 423 e-117
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 141 2e-32
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 115 1e-24
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 105 2e-21
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 104 3e-21
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 63 1e-08
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 57 5e-07
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 55 2e-06
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 50 6e-05
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 50 1e-04
protein update 2009. 5.17
PSORT

psg: 0.51 gvh: 0.21 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.03
nuc: 0.18 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHB216 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHB216Z
3' end seq.
>CHB216Z.Seq
NNNNNNNNNNGGAGACCATATCCACCAGTTTGTAGAACTAGATGTCCAGAAGGTCATGAA
TGTAAAGTTGATGAATGGGGTAAAGAATGTTGCGTAAAGATCAAATGTGATGATATTTGT
GACTTGCGTTGTCCAAAGGGTCATGAATGCAAGATCAAACATGATGGTAGTAAATGCTGT
GTCCGTTCATGGAGACCAAGACCACATAAACCACATCCACGTCCACCAATCTGCAGATTA
AGATGTCCACCAGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAA
AAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAA
CATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAAT
TCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCA
ACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGAT
GGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGAT
TTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAATT
ACAACCTTTAATCGCTTGTAAAGGTGAAGGATTAGAACAAGGAATTAATTGGTTATCTGA
TTGTTTACGTAAAAATGCAAGAACAATTAAAAATCAGATTTTTAAG
Length of 3' end seq. 766
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -