CHB210
Library CH
(Link to library)
Clone ID CHB210
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15820-1
Original site URL
Representative seq. ID CHB210P
(Link to Original site)
Representative DNA sequence
>CHB210 (CHB210Q) /CSM/CH/CHB2-A/CHB210Q.Seq.d/
ACTGTTGGCCTACTGGNAAAAAAACAATAACAAAATAAAATAAATTATAATTAAAAGTTT
AATAATTTTTTAAATCTCTACACCATAGAAATAAATTTAATTTTAAAGAAAAAAAAAAXX
XXXXXXXXGTGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGC
ATTATTAGGAGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGG
TGTTTCAGGTTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGT
CGGTTTAATTGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGC
TGGTATCTTATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTT
AGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCT
ATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTAT
TGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTC
TGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTC
TCATCATTGGGTTTATTGGCTCGGTC
sequence update 2002.10.25
Translated Amino Acid sequence
tvgllxkkq*qnkinyn*KFNNFLNLYTIEINLILKKKK---

---GSVCAAFAVAGDSAARALLGGLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRV
GLIDSLYYVAAQILGCIAGAGILYGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSIL
CLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWS
HHWVYWLG


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxkkq*qnkinyn*KFNNFLNLYTIEINLILKKKK---

---vgqyvqllqlqvivqlvhy*ed*fkvwhwlh*fgqylvfqvvi*iql*l*qiyylve
sv*livyimlqpkflvvlpvlvsymvafqicieltwvfhi*hlv*ilvklsswr*c*lvf
yvfvy*vplfsmfgivvlivlhhlqlv*lylle*q*vlislevl*iqlef*ahqs*veyg
liigfigsv

Frame B:
llaywxknnnkik*iiiksliif*istp*k*i*f*rkkk---

---wvsmcsfcscr**cssciirrtnsrygigcinlgsiwcfrl*fksscnfskfiiw*s
rfn**silccspnswlycrcwyliwlpskyv*n*lgcstfstwyeywssfphgddvn*ys
mslcirylcfqclgsss*sycticnwfsfiywssnrf*flwrcfkss*sfrpinhkwsmv
sslgllar

Frame C:
cwptgkktitk*nkl*lkv**ffkslhhrnkfnfkekk---

---GSVCAAFAVAGDSAARALLGGLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRV
GLIDSLYYVAAQILGCIAGAGILYGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSIL
CLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWS
HHWVYWLG

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/ 1106 0.0
CHB210 (CHB210Q) /CSM/CH/CHB2-A/CHB210Q.Seq.d/ 1106 0.0
CHC647 (CHC647Q) /CSM/CH/CHC6-B/CHC647Q.Seq.d/ 1104 0.0
CHB271 (CHB271Q) /CSM/CH/CHB2-C/CHB271Q.Seq.d/ 1104 0.0
CFG195 (CFG195Q) /CSM/CF/CFG1-D/CFG195Q.Seq.d/ 1104 0.0
SSD468 (SSD468Q) /CSM/SS/SSD4-C/SSD468Q.Seq.d/ 1102 0.0
CFH178 (CFH178Q) /CSM/CF/CFH1-D/CFH178Q.Seq.d/ 1096 0.0
CHB373 (CHB373Q) /CSM/CH/CHB3-D/CHB373Q.Seq.d/ 1092 0.0
CFG359 (CFG359Q) /CSM/CF/CFG3-C/CFG359Q.Seq.d/ 1088 0.0
CHG566 (CHG566Q) /CSM/CH/CHG5-C/CHG566Q.Seq.d/ 1057 0.0

own update 2003.10. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB032841|AB032841.1 Dictyostelium discoideum gene for AqpA, complete cds. 1031 0.0 3
CK263763|CK263763.1 EST709841 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABO51 3' end, mRNA sequence. 38 0.10 2
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 0.25 8
AC117715|AC117715.6 Mus musculus clone RP23-62M19, WORKING DRAFT SEQUENCE, 2 ordered pieces. 38 0.26 5
CR361567|CR361567.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 0.85 3
CO319191|CO319191.1 EK276533.5prime Exelixis FlyTag CK01 pCDNA-SK+ Drosophila melanogaster cDNA clone EK276533 5, mRNA sequence. 34 1.3 2
CK262404|CK262404.1 EST708482 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABG08 3' end, mRNA sequence. 38 1.4 2
BX569796|BX569796.6 Zebrafish DNA sequence from clone CH211-106K21 in linkage group 2. 42 1.5 3
AC022133|AC022133.7 Homo sapiens chromosome 5 clone CTD-2207L17, complete sequence. 34 2.4 4
AC069298|AC069298.8 Homo sapiens chromosome 3 clone RP11-56K23, complete sequence. 44 2.7 3
dna update 2004. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q06019) RecName: Full=Lens fiber major intrinsic protein; AltNa... 126 5e-28
(Q9V5Z7) RecName: Full=Aquaporin; &AE013599_1356(AE013599|pid:n... 124 2e-27
AB433197_1(AB433197|pid:none) Coptotermes formosanus CfAQP1 mRNA... 124 2e-27
AB433198_1(AB433198|pid:none) Coptotermes formosanus CfAQP2 mRNA... 124 2e-27
(P06624) RecName: Full=Lens fiber major intrinsic protein; AltNa... 122 7e-27
(A4L9J0) RecName: Full=Lens fiber major intrinsic protein; AltNa... 122 7e-27
(A2IBY8) RecName: Full=Lens fiber major intrinsic protein; AltNa... 122 9e-27
BC094131_1(BC094131|pid:none) Xenopus laevis hypothetical protei... 122 1e-26
AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo... 122 1e-26
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;... 120 5e-26
protein update 2009. 3.29
PSORT

psg: 0.79 gvh: 0.81 alm: 0.24 top: 0.53 tms: 0.27 mit: 0.15 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
28.0 %: endoplasmic reticulum
24.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for CHB210 is mit

5' end seq. ID CHB210F
5' end seq.
>CHB210F.Seq
ACTGTTGGCCTACTGGNAAAAAAACAATAACAAAATAAAATAAATTATAATTAAAAGTTT
AATAATTTTTTAAATCTCTACACCATAGAAATAAATTTAATTTTAAAGAAAAAAAAAANN
NNNNNNNN
Length of 5' end seq. 128
3' end seq. ID CHB210Z
3' end seq.
>CHB210Z.Seq
NNNNNNNNNNGTGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGT
GCATTATTAGGAGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCT
GGTGTTTCAGGTTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGA
GTCGGTTTAATTGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGT
GCTGGTATCTTATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACAT
TTAGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATT
CTATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGT
ATTGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTC
TCTGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGG
TCTCATCATTGGGTTTATTGGCTCGGTC
Length of 3' end seq. 568
Connected seq. ID CHB210P
Connected seq.
>CHB210P.Seq
ACTGTTGGCCTACTGGNAAAAAAACAATAACAAAATAAAATAAATTATAATTAAAAGTTT
AATAATTTTTTAAATCTCTACACCATAGAAATAAATTTAATTTTAAAGAAAAAAAAAA--
--------GTGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGC
ATTATTAGGAGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGG
TGTTTCAGGTTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGT
CGGTTTAATTGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGC
TGGTATCTTATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTT
AGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCT
ATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTAT
TGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTC
TGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTC
TCATCATTGGGTTTATTGGCTCGGTC
Length of connected seq. 676
Full length Seq ID -
Full length Seq. -
Length of full length seq. -