CHB148
Library CH
(Link to library)
Clone ID CHB148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14245-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHB148 (CHB148Q) /CSM/CH/CHB1-B/CHB148Q.Seq.d/
XXXXXXXXXXAAANAACNTTGATTCNACAAGNCTTGATCTCNANAATTAATAGTTAAAAA
AAAAAAAAATTTTGTTTTATTTTAGTAATATTTTTAATTTAAATCAAATAACAAATAATA
AATAACATATTTTAAAAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---xnxdstxldlxn**LKKKKILFYFSNIFNLNQITNNK*hilk


Translated Amino Acid sequence (All Frames)
Frame A:
---xnxdstxldlxn**LKKKKILFYFSNIFNLNQITNNK*hilk


Frame B:
---xtlixqxlisxins*kkkkfcfilvifli*ik*qiinnif*n


Frame C:
---xx*fxkx*sxxlivkkkknfvlf**yf*fksnnk**ityfk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHB148 (CHB148Q) /CSM/CH/CHB1-B/CHB148Q.Seq.d/ 54 5e-07
VSE827 (VSE827Q) /CSM/VS/VSE8-B/VSE827Q.Seq.d/ 30 7.6
SHG219 (SHG219Q) /CSM/SH/SHG2-A/SHG219Q.Seq.d/ 30 7.6

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BV089946|BV089946.1 RPAMMSEQ0001842 Roche Palo Alto Mus musculus STS genomic, sequence tagged site. 30 5.7 2

dna update 2003.12.12
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 59,183,231
protein update 2009. 5.17
PSORT

psg: 0.88 gvh: 0.36 alm: 0.55 top: 0.27 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHB148 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHB148Z
3' end seq.
>CHB148Z.Seq
NNNNNNNNNNAAANAACNTTGATTCNACAAGNCTTGATCTCNANAATTAATAGTTAAAAA
AAAAAAAAATTTTGTTTTATTTTAGTAATATTTTTAATTTAAATCAAATAACAAATAATA
AATAACATATTTTAAAAT
Length of 3' end seq. 138
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -