CHB125
Library CH
(Link to library)
Clone ID CHB125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15648-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHB125 (CHB125Q) /CSM/CH/CHB1-B/CHB125Q.Seq.d/
XXXXXXXXXXATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTGGTGT
CTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGT
TACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAGGGTAA
AAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACG
TGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGT
TTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAAT
CACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCT
CATTGAACAAGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAAT
GAGAGTCGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAA
TTCAACTTTGGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---VNAVGSLIARSSICGVYLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEGKR
RQLIDSLHRLPTNLGMALRVREQCKAIAQKIYKKNSIFVLGKGFAEPIAFEGALKIKEIT
YCHAEGYSGGALKHGPFALIEQDTPIILIILDDSNSPLMRVAAEEVKARGAHTIVITNNS
TLAKHIAHDTILIPSNG


Translated Amino Acid sequence (All Frames)
Frame A:
---l*mplvh*lqevqfvvsi*mqvvnml*lqpkhshhklqyyhwlqigslnieaskrvk
dvs*silfivyqqiwvwhyvfvnnvkqslkkfikriqslfwvkvslnqshlkvl*klkks
pivmlkvivvvllnmvhslslnkihqls*sf*mivilh**esplkk*kqevlilsslqii
qlwlnislmipf*fqvmv


Frame B:
---ckcrwfidckkfnlwclfkcrs*tccsfnqsilitsysiiigcklvrst*rhrrg*k
tsvnrfsssftnkfgygitcs*tm*snrsknl*kefnlcfg*rfr*tnri*rcfen*rnh
llsc*rl*wwcs*twsirsh*trytnyldhfr***fsinesrr*rskskrcsyyrhyk*f
nfg*tyrs*yhfnsk*w


Frame C:
---VNAVGSLIARSSICGVYLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEGKR
RQLIDSLHRLPTNLGMALRVREQCKAIAQKIYKKNSIFVLGKGFAEPIAFEGALKIKEIT
YCHAEGYSGGALKHGPFALIEQDTPIILIILDDSNSPLMRVAAEEVKARGAHTIVITNNS
TLAKHIAHDTILIPSNG


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD470 (VFD470Q) /CSM/VF/VFD4-C/VFD470Q.Seq.d/ 1162 0.0
SSD124 (SSD124Q) /CSM/SS/SSD1-A/SSD124Q.Seq.d/ 1162 0.0
SFE659 (SFE659Q) /CSM/SF/SFE6-C/SFE659Q.Seq.d/ 1162 0.0
CHB125 (CHB125Q) /CSM/CH/CHB1-B/CHB125Q.Seq.d/ 1162 0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/ 1162 0.0
AFO350 (AFO350Q) /CSM/AF/AFO3-C/AFO350Q.Seq.d/ 1162 0.0
CFI829 (CFI829Q) /CSM/CF/CFI8-B/CFI829Q.Seq.d/ 1154 0.0
AFM651 (AFM651Q) /CSM/AF/AFM6-C/AFM651Q.Seq.d/ 1154 0.0
AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/ 1154 0.0
AFL243 (AFL243Q) /CSM/AF/AFL2-B/AFL243Q.Seq.d/ 1140 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI746638|BI746638.1 rm29g07.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:Q19130 Q19130 F07A11.2 PROTEIN. [1] ;, mRNA sequence. 36 6e-05 3
BQ576997|BQ576997.1 PfESToab12e02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence. 40 2e-04 3
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 40 3e-04 9
BU497494|BU497494.1 PfESToab64b06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence. 40 3e-04 3
BM169673|BM169673.1 EST572196 PyBS Plasmodium yoelii yoelii cDNA clone PYCPU83 5' end, mRNA sequence. 36 0.10 2
AC103861|AC103861.1 Homo sapiens chromosome 11 clone RP11-160M15 map 11, LOW-PASS SEQUENCE SAMPLING. 38 0.32 2
AC104038|AC104038.9 Homo sapiens chromosome 11, clone RP11-746C23, complete sequence. 46 0.54 1
AC107881|AC107881.16 Homo sapiens chromosome 11, clone CTD-2007B22, complete sequence. 46 0.54 1
BU246042|BU246042.1 603781193F1 CSEQCHN34 Gallus gallus cDNA clone ChEST729j23 5', mRNA sequence. 46 0.54 1
BU271264|BU271264.1 603506257F1 CSEQCHN52 Gallus gallus cDNA clone ChEST431a16 5', mRNA sequence. 46 0.54 1
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro... 185 7e-46
CP000777_489(CP000777|pid:none) Leptospira biflexa serovar Patoc... 144 2e-33
BC160581_1(BC160581|pid:none) Xenopus tropicalis glutamine-fruct... 141 1e-32
CP001097_87(CP001097|pid:none) Chlorobium limicola DSM 245, comp... 140 2e-32
CP000108_5(CP000108|pid:none) Chlorobium chlorochromatii CaD3, c... 139 4e-32
CP001101_96(CP001101|pid:none) Chlorobium phaeobacteroides BS1, ... 139 7e-32
CP000607_136(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 138 1e-31
FN317281_1(FN317281|pid:none) Schistosoma japonicum isolate Anhu... 137 2e-31
BC163281_1(BC163281|pid:none) Danio rerio glutamine-fructose-6-p... 137 3e-31
DQ173929_1(DQ173929|pid:none) Danio rerio glutamine fructose-6-p... 137 3e-31
protein update 2009. 5.17
PSORT

psg: 0.88 gvh: 0.49 alm: 0.38 top: 0.57 tms: 0.00 mit: 0.31 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHB125 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHB125Z
3' end seq.
>CHB125Z.Seq
NNNNNNNNNNATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTGGTGT
CTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGT
TACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAGGGTAA
AAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACG
TGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGT
TTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAAT
CACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCT
CATTGAACAAGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAAT
GAGAGTCGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAA
TTCAACTTTGGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTA
Length of 3' end seq. 596
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -