CHA864
Library CH
(Link to library)
Clone ID CHA864
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHA864 (CHA864Q) /CSM/CH/CHA8-C/CHA864Q.Seq.d/
XXXXXXXXXXGNNNTNNGNNGNNNGNGNNNNNNTGNTGNNGTNTNTTGNNTTNNNNNGNG
NNNNNGNNNGNGNNCNNATGCNNNGTGNTATAGAGAGNNNAGNTGCAGCAGNAGAGTCCA
GNNNGCATGGATCNNCCNTTTTCCNATATATTATGAGAGATGGTNAATTGGAAAGAGNAT
TNTC
sequence update 2002. 9.10
Translated Amino Acid sequence
---XXXXXXXXXXXXXXXXXXXXXXMXXXIEXXXAAXESXXHGSXXFXYIMRDGXLERXX


Translated Amino Acid sequence (All Frames)
Frame A:
---XXXXXXXXXXXXXXXXXXXXXXMXXXIEXXXAAXESXXHGSXXFXYIMRDGXLERXX


Frame B:
---xxxxxxxxxxxlxxxxxxxxxxcxvx*rxxxqqxspxxmdxpfsxil*emvnwkexx


Frame C:
---xxxxxxxxxvxxxxxxxxxxxxaxxyrexxcsxrvqxawixxfpiyyerwxigkxix


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHA864 (CHA864Q) /CSM/CH/CHA8-C/CHA864Q.Seq.d/ 103 9e-22
SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/ 80 1e-14
SLH143 (SLH143Q) /CSM/SL/SLH1-B/SLH143Q.Seq.d/ 80 1e-14
SLE843 (SLE843Q) /CSM/SL/SLE8-B/SLE843Q.Seq.d/ 80 1e-14
SLE641 (SLE641Q) /CSM/SL/SLE6-B/SLE641Q.Seq.d/ 80 1e-14
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/ 80 1e-14
SFJ410 (SFJ410Q) /CSM/SF/SFJ4-A/SFJ410Q.Seq.d/ 80 1e-14
SFJ389 (SFJ389Q) /CSM/SF/SFJ3-D/SFJ389Q.Seq.d/ 80 1e-14
SFJ341 (SFJ341Q) /CSM/SF/SFJ3-B/SFJ341Q.Seq.d/ 80 1e-14
SFJ310 (SFJ310Q) /CSM/SF/SFJ3-A/SFJ310Q.Seq.d/ 80 1e-14

own update 2002.11.20
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 285,000
Number of Sequences: 30356762
Number of extensions: 285000
Number of successful extensions: 55227
Number of sequences better than 10.0: 0
length of query: 184
length of database: S,976,024,753
effective HSP length: 22
effective length of query: 162
effective length of database: S,308,175,989
effective search space: 5719924510218
effective search space used: 5719924510218
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003.12.11
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 137,247,117
protein update 2009. 5.17
PSORT

psg: 0.75 gvh: 0.43 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHA864 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHA864Z
3' end seq.
>CHA864Z.Seq
NNNNNNNNNNGNNNTNNGNNGNNNGNGNNNNNNTGNTGNNGTNTNTTGNNTTNNNNNGNG
NNNNNGNNNGNGNNCNNATGCNNNGTGNTATAGAGAGNNNAGNTGCAGCAGNAGAGTCCA
GNNNGCATGGATCNNCCNTTTTCCNATATATTATGAGAGATGGTNAATTGGAAAGAGNAT
TNTC
Length of 3' end seq. 184
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -