>CHA846 (CHA846Q) /CSM/CH/CHA8-B/CHA846Q.Seq.d/
XXXXXXXXXXATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGAT
GAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGAC
GAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAA
GAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGT
TTAGTTATGAAAAGAAGTACCGCTNAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTA
GCTTTTGCTGCTGTCGGTGTCGNNCCATCCATTATGGG

---SHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKE
GGTTTAGNSSQMSDGAAACLVMKRSTAXRLGLKVELVFVAFAAVGVXPSIM

Frame A:
---ftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgqiktsfqr
gwynhrw*l*sne*wcrrlfsyekkyrxkigsqg*igfrsfcccrcrxihyg


Frame B:
---SHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKE
GGTTTAGNSSQMSDGAAACLVMKRSTAXRLGLKVELVFVAFAAVGVXPSIM


Frame C:
---htrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn*nqlskr
vvqpplvtlvk*vmvpplv*l*kevplkdwvsrlnwfs*llllsvsxhplw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA846 (CHA846Q) /CSM/CH/CHA8-B/CHA846Q.Seq.d/                        632   0.0
VSH806 (VSH806Q) /CSM/VS/VSH8-A/VSH806Q.Seq.d/                        624   e-178
VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                        624   e-178
VFN731 (VFN731Q) /CSM/VF/VFN7-B/VFN731Q.Seq.d/                        624   e-178
VFN665 (VFN665Q) /CSM/VF/VFN6-C/VFN665Q.Seq.d/                        624   e-178
VFN350 (VFN350Q) /CSM/VF/VFN3-C/VFN350Q.Seq.d/                        624   e-178
VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/                        624   e-178
VFM869 (VFM869Q) /CSM/VF/VFM8-C/VFM869Q.Seq.d/                        624   e-178
VFM636 (VFM636Q) /CSM/VF/VFM6-B/VFM636Q.Seq.d/                        624   e-178
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/                        624   e-178

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   624   e-175  1
AI563047|AI563047.1 EST00171 watermelon lambda zap library Citrullus lanatus cDNA clone WMLS336 5' similar to acetyl-CoA acyltransferase, mRNA sequence.    38   0.003  2
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   0.004  2
CB823773|CB823773.1 EST 4997 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh001l03 3', mRNA sequence.    52   0.005  1
CB821170|CB821170.1 EST 2021 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be001h20 3', mRNA sequence.    52   0.005  1
AJ504889|AJ504889.1 Pyrus communis EST, clone L696.                52   0.005  1
CB086716|CB086716.1 hj89c06.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hj89c06, mRNA sequence.    50   0.019  1
BU043554|BU043554.1 PP_LEa0016G22f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0016G22f, mRNA sequence.    48   0.076  1
BE642069|BE642069.1 Cri2_5_A22_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_5_A22 5', mRNA sequence.    40   0.33   2
AC010016|AC010016.6 Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    44   0.38   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   163   2e-39
AC126019_22(AC126019|pid:none) Medicago truncatula clone mth2-22...    97   2e-19
M32801_1(M32801|pid:none) Rat 3-ketoacyl-CoA thiolase 2 mRNA, co...    96   3e-19
J02749_1(J02749|pid:none) Rat peroxisomal 3-ketoacyl-CoA thiolas...    96   3e-19
(P21775) RecName: Full=3-ketoacyl-CoA thiolase A, peroxisomal;  ...    96   3e-19
AK160568_1(AK160568|pid:none) Mus musculus ES cells cDNA, RIKEN ...    96   3e-19
BC102927_1(BC102927|pid:none) Bos taurus acetyl-Coenzyme A acylt...    96   3e-19
(Q8VCH0) RecName: Full=3-ketoacyl-CoA thiolase B, peroxisomal;  ...    96   3e-19
BC054299_1(BC054299|pid:none) Xenopus laevis acetyl-Coenzyme A a...    96   3e-19
D90063_1(D90063|pid:none) Rattus norvegicus gene for peroxisomal...    96   3e-19

 psg: 0.49  gvh: 0.21  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHA846 is cyt

>CHA846Z.Seq
NNNNNNNNNNATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGAT
GAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGAC
GAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAA
GAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGT
TTAGTTATGAAAAGAAGTACCGCTNAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTA
GCTTTTGCTGCTGTCGGTGTCGNNCCATCCATTATGGG