CHA831
Library CH
(Link to library)
Clone ID CHA831
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16451-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHA831 (CHA831Q) /CSM/CH/CHA8-B/CHA831Q.Seq.d/
AACTCGACCTAACAAATAAAAAAAGCAAAATGCAAAATAAACCATCATTCATTTTAAGAA
ACCCATCAGCTAATAAAGGTACTGGTTTTAATAATGAAGAAAGAGAAAAATTAGGATTAA
AAGGTTTATTACCACCAAAGGTTGAATCATTACAAGAACAATCAGATAGAGCATTATCAC
AATTTACATCATTTAATACAAACTTGGAAAGATATATTTTCTTAAATTGTTTACGTGATC
GTAATGAAACTTTATTCTATTATTTATTAAGTAATAATTTAGAATTAATGATGCCAATCA
TTTATACACCAACCGTAGGTGAAGCATGTCAAAAGTTTGGTAATGAATTCCGTTTCGCCC
AAGGTATGTATTTTGCATCCCAAGATAAAGGTAACATTCGTGCCATGATGGACAATTGGC
CAGCCGAAGGTGTCGATATTATCGTTGTTTCCGATGGTTCACGTATTTTGGGTTTAGGTG
ATCTCGGTACCAACGGTATGGGTATCCCAGTTGGTAAGTTACAATTGTACGTCGCXXXXX
XXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LDLTNKKSKMQNKPSFILRNPSANKGTGFNNEEREKLGLKGLLPPKVESLQEQSDRALSQ
FTSFNTNLERYIFLNCLRDRNETLFYYLLSNNLELMMPIIYTPTVGEACQKFGNEFRFAQ
GMYFASQDKGNIRAMMDNWPAEGVDIIVVSDGSRILGLGDLGTNGMGIPVGKLQLYV---


Translated Amino Acid sequence (All Frames)
Frame A:
nst*qikkakckinhhsf*ethqlikvlvlimkkekn*d*kvyyhqrlnhyknnqiehyh
nlhhliqtwkdifs*ivyvivmklysiiy*vii*n**cqsfihqp*vkhvkslvmnsvsp
kvcilhpkikvtfvp*wtigqpkvsilslfpmvhvfwv*visvptvwvsqlvsyncts--
-


Frame B:
trpnk*kkqnak*tiihfkkpis**rywf***rkrkirikrfittkg*iitrtir*siit
iyii*yklgkiyflklft*s**nfillfik**frindanhlytnrr*smskvw**ipfrp
ryvfcipr*r*hschdgqlasrrcryyrcfrwftyfgfr*sryqrygypsw*vtivr---


Frame C:
LDLTNKKSKMQNKPSFILRNPSANKGTGFNNEEREKLGLKGLLPPKVESLQEQSDRALSQ
FTSFNTNLERYIFLNCLRDRNETLFYYLLSNNLELMMPIIYTPTVGEACQKFGNEFRFAQ
GMYFASQDKGNIRAMMDNWPAEGVDIIVVSDGSRILGLGDLGTNGMGIPVGKLQLYV---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI106 (VFI106Q) /CSM/VF/VFI1-A/VFI106Q.Seq.d/ 1019 0.0
SFH864 (SFH864Q) /CSM/SF/SFH8-C/SFH864Q.Seq.d/ 1019 0.0
CHA831 (CHA831Q) /CSM/CH/CHA8-B/CHA831Q.Seq.d/ 1019 0.0
CFJ334 (CFJ334Q) /CSM/CF/CFJ3-B/CFJ334Q.Seq.d/ 1019 0.0
CFG469 (CFG469Q) /CSM/CF/CFG4-C/CFG469Q.Seq.d/ 1019 0.0
VFK276 (VFK276Q) /CSM/VF/VFK2-D/VFK276Q.Seq.d/ 1005 0.0
CFH782 (CFH782Q) /CSM/CF/CFH7-D/CFH782Q.Seq.d/ 1005 0.0
VFI253 (VFI253Q) /CSM/VF/VFI2-C/VFI253Q.Seq.d/ 1003 0.0
VFJ368 (VFJ368Q) /CSM/VF/VFJ3-C/VFJ368Q.Seq.d/ 983 0.0
CHB626 (CHB626Q) /CSM/CH/CHB6-B/CHB626Q.Seq.d/ 793 0.0

own update 2002.11.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY387644|AY387644.1 Dictyostelium discoideum malic enzyme gene, complete cds. 910 0.0 3
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 902 0.0 5
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome. 52 0.009 1
AE017029|AE017029.1 Bacillus anthracis str. Ames section 6 of 18 of the complete genome. 52 0.009 1
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome. 52 0.009 1
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome. 52 0.009 1
Y09212|Y09212.1 B.cereus partial gltT, aspA and partial maoX genes. 52 0.009 1
AE017270|AE017270.1 Bacillus cereus ATCC 10987, section 7 of 18 of the complete genome. 52 0.009 1
AE017031|AE017031.1 Bacillus anthracis str. Ames section 8 of 18 of the complete genome. 34 0.010 9
AY194854|AY194854.1 Meloidogyne mayaguensis 5S-18S ribosomal RNA intergenic spacer, partial sequence. 40 0.011 2
dna update 2004. 9.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001322_605(CP001322|pid:none) Desulfatibacillum alkenivorans A... 174 1e-42
DQ901690_1(DQ901690|pid:none) Tigriopus californicus haplotype S... 167 2e-40
DQ901654_1(DQ901654|pid:none) Tigriopus californicus haplotype A... 167 2e-40
DQ901663_1(DQ901663|pid:none) Tigriopus californicus haplotype A... 167 2e-40
DQ901691_1(DQ901691|pid:none) Tigriopus californicus haplotype S... 167 2e-40
DQ901669_1(DQ901669|pid:none) Tigriopus californicus haplotype S... 167 2e-40
DQ901657_1(DQ901657|pid:none) Tigriopus californicus haplotype A... 167 2e-40
DQ901666_1(DQ901666|pid:none) Tigriopus californicus haplotype S... 167 2e-40
(Q6LHK5) RecName: Full=NAD-dependent malic enzyme 2; Sh... 165 8e-40
AY149910_1(AY149910|pid:none) Mastigamoeba balamuthi malic enzym... 164 1e-39
protein update 2009. 3.29
PSORT

psg: 0.68 gvh: 0.55 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: mitochondrial
24.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for CHA831 is nuc

5' end seq. ID CHA831F
5' end seq.
>CHA831F.Seq
AACTCGACCTAACAAATAAAAAAAGCAAAATGCAAAATAAACCATCATTCATTTTAAGAA
ACCCATCAGCTAATAAAGGTACTGGTTTTAATAATGAAGAAAGAGAAAAATTAGGATTAA
AAGGTTTATTACCACCAAAGGTTGAATCATTACAAGAACAATCAGATAGAGCATTATCAC
AATTTACATCATTTAATACAAACTTGGAAAGATATATTTTCTTAAATTGTTTACGTGATC
GTAATGAAACTTTATTCTATTATTTATTAAGTAATAATTTAGAATTAATGATGCCAATCA
TTTATACACCAACCGTAGGTGAAGCATGTCAAAAGTTTGGTAATGAATTCCGTTTCGCCC
AAGGTATGTATTTTGCATCCCAAGATAAAGGTAACATTCGTGCCATGATGGACAATTGGC
CAGCCGAAGGTGTCGATATTATCGTTGTTTCCGATGGTTCACGTATTTTGGGTTTAGGTG
ATCTCGGTACCAACGGTATGGGTATCCCAGTTGGTAAGTTACAATTGTACGTCGCNNNNN
NNNNN
Length of 5' end seq. 545
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -