>CHA820 (CHA820Q) /CSM/CH/CHA8-A/CHA820Q.Seq.d/
XXXXXXXXXXATTGAATTANAAGGTATACTCAGAGTGGAATTTAGTCCAATGGTTAATTA
CTCACGAATGCGTGTCATTNTCTTATGCTGAACCAATCGATGAAAATCAACCACCTCGTC
TCATTCCAAATTATGAAAGTATGGGCGCTATTTATGTGCCACTAGATCAATTAACGNCAT
TCAATTNACGTGGTAAAGAACCAACAATTTGGTTCAATTATGTTGATAAAAACAAACCA

---LNXKVYSEWNLVQWLITHECVSXSYAEPIDENQPPRLIPNYESMGAIYVPLDQLTXF
NXRGKEPTIWFNYVDKNKP

Frame A:
---LNXKVYSEWNLVQWLITHECVSXSYAEPIDENQPPRLIPNYESMGAIYVPLDQLTXF
NXRGKEPTIWFNYVDKNKP


Frame B:
---*ixrytqsgi*sng*lltnachxlmlnqsmkinhlvsfqimkvwalfmch*in*rhs
ixvvknqqfgsimliktn


Frame C:
---elxgilrvefspmvnysrmrvixlc*tnr*ksttsshskl*kygrylcatrsinxiq
xtw*rtnnlvqlc**kqt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA820 (CHA820Q) /CSM/CH/CHA8-A/CHA820Q.Seq.d/                        430   e-120
VFM484 (VFM484Q) /CSM/VF/VFM4-D/VFM484Q.Seq.d/                        414   e-115
VFG646 (VFG646Q) /CSM/VF/VFG6-B/VFG646Q.Seq.d/                        414   e-115
VFE490 (VFE490Q) /CSM/VF/VFE4-D/VFE490Q.Seq.d/                        414   e-115
SFH759 (SFH759Q) /CSM/SF/SFH7-C/SFH759Q.Seq.d/                        414   e-115
CFI660 (CFI660Q) /CSM/CF/CFI6-C/CFI660Q.Seq.d/                        414   e-115
AHL220 (AHL220Q) /CSM/AH/AHL2-A/AHL220Q.Seq.d/                        414   e-115
AFN823 (AFN823Q) /CSM/AF/AFN8-A/AFN823Q.Seq.d/                        414   e-115
AFM679 (AFM679Q) /CSM/AF/AFM6-D/AFM679Q.Seq.d/                        414   e-115
AFA588 (AFA588Q) /CSM/AF/AFA5-D/AFA588Q.Seq.d/                        414   e-115

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   299   e-111  2
AC117910|AC117910.6 Rattus norvegicus clone CH230-430B18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38   0.57   2
CK160654|CK160654.1 FGAS042267 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA, mRNA sequence.    34   2.4    2
AB019224|AB019224.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22.    42   3.2    1
AU001143|AU001143.1 Bombyx mori cDNA, clone fbm0110f.              30   3.7    2
AY224374|AY224374.1 Theropithecus gelada 891096 C4 gene, exon 9 and partial cds; and endogenous retrovirus ERV-K(C4), partial sequence.    32   9.3    3
AY224375|AY224375.1 Mandrillus sphinx Mandrill.1119 C4 gene, exon 9 and partial cds; and endogenous retrovirus ERV-K(C4), partial sequence.    32   9.3    3
AC006718|AC006718.1 Caenorhabditis elegans clone Y16E11, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   9.6    4
AF025453|AF025453.1 Caenorhabditis elegans cosmid C08F1, complete sequence.    40   13     1
AL732544|AL732544.12 Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7.    40   13     1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 353,293,976

 psg: 0.83  gvh: 0.59  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHA820 is nuc

>CHA820Z.Seq
NNNNNNNNNNATTGAATTANAAGGTATACTCAGAGTGGAATTTAGTCCAATGGTTAATTA
CTCACGAATGCGTGTCATTNTCTTATGCTGAACCAATCGATGAAAATCAACCACCTCGTC
TCATTCCAAATTATGAAAGTATGGGCGCTATTTATGTGCCACTAGATCAATTAACGNCAT
TCAATTNACGTGGTAAAGAACCAACAATTTGGTTCAATTATGTTGATAAAAACAAACCA