>CHA810 (CHA810Q) /CSM/CH/CHA8-A/CHA810Q.Seq.d/
AAATACATATAAATATTTATACAAACACATAAAACATATAAAAAAAAATGGGTGGTAAAA
AATTTGGTACCAATTCAAAAGCAGAAGAAGCTCGTTCAAAGAAAGCAGAAGTTAAAAAGA
ATGAAAATGAAAAGAAACAAAGAGATAAAGAGGATAAAATGNGGGAAGAAACAGATNCAA
AAATTTTAGATAAACAAAAAAAACAAAAAGAAAAAGAGGAAAAAGCAAGAGAAGATGCAA
AAAAGAAACAAGAAGCAAAAGAATTATTACAACAAGAAGATAAAGAAATTAAAGAAAGAT
ATGGTAAACCATCAGATACTAAAGTAACTCGTTTTGAAATTCAACAAAAGAGAGATAAAG
AACAAAAACAAAGAGAAAAAGAACTTGCTTCAAGACCATCCGATCCAAGAGTTGTTGTAG
TTCCAACAACAACAACAACAACAACAACTACAACTACAACTACCACTGGATCTGATGATC
ATGAAGAANAAGATTTTAACCTTGAAGAGAATATGAATCATATTTTACGTGAACAAAGAT
TGAAAGATGGTAAAGATGTTATTGATGCTAGAGATATTAATGAAGCXXXXXXXXXX

ihiniytnt*ni*KKMGGKKFGTNSKAEEARSKKAEVKKNENEKKQRDKEDKMXEETDXK
ILDKQKKQKEKEEKAREDAKKKQEAKELLQQEDKEIKERYGKPSDTKVTRFEIQQKRDKE
QKQREKELASRPSDPRVVVVPTTTTTTTTTTTTTTGSDDHEEXDFNLEENMNHILREQRL
KDGKDVIDARDINE---

Frame A:
kyi*ifiqthktykkkwvvknlvpiqkqkklvqrkqklkrmkmkrnkeikrikxgkkqxq
kf*inkknkkkkrkkqekmqkrnkkqknyynkkikklkkdmvnhqilk*lvlkfnkreik
nknkekknllqdhpiqell*fqqqqqqqqlqlqlpldlmimkxkiltlkri*iifyvnkd
*kmvkmllmleilmk---


Frame B:
ntykylykhikhikkngw*kiwyqfksrrssfkesrs*ke*k*ketkr*rg*nxgrnrxk
nfr*tkktkrkrgkskrrckketrskriittrr*rn*rkiw*tiry*snsf*nstker*r
tktkrkrtcfktirsksccssnnnnnnnnynynyhwi**s*rxrf*p*reyesyft*tki
erw*rcy*c*ry**---


Frame C:
ihiniytnt*ni*KKMGGKKFGTNSKAEEARSKKAEVKKNENEKKQRDKEDKMXEETDXK
ILDKQKKQKEKEEKAREDAKKKQEAKELLQQEDKEIKERYGKPSDTKVTRFEIQQKRDKE
QKQREKELASRPSDPRVVVVPTTTTTTTTTTTTTTGSDDHEEXDFNLEENMNHILREQRL
KDGKDVIDARDINE---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA810 (CHA810Q) /CSM/CH/CHA8-A/CHA810Q.Seq.d/                        244   1e-63
VSC288 (VSC288Q) /CSM/VS/VSC2-D/VSC288Q.Seq.d/                         78   2e-13
SLC782 (SLC782Q) /CSM/SL/SLC7-D/SLC782Q.Seq.d/                         58   2e-07
SLH239 (SLH239Q) /CSM/SL/SLH2-B/SLH239Q.Seq.d/                         38   0.15
FC-BI10 (FC-BI10Q) /CSM/FC/FC-BI/FC-BI10Q.Seq.d/                       36   0.59
VSE121 (VSE121Q) /CSM/VS/VSE1-A/VSE121Q.Seq.d/                         34   2.3
VHQ116 (VHQ116Q) /CSM/VH/VHQ1-A/VHQ116Q.Seq.d/                         34   2.3
VHO347 (VHO347Q) /CSM/VH/VHO3-B/VHO347Q.Seq.d/                         34   2.3
VHD744 (VHD744Q) /CSM/VH/VHD7-B/VHD744Q.Seq.d/                         34   2.3
VHC147 (VHC147Q) /CSM/VH/VHC1-B/VHC147Q.Seq.d/                         34   2.3

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE638151|CE638151.1 tigr-gss-dog-17000366769205 Dog Library Canis familiaris genomic,genomic survey sequence.    50   0.041  1
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.12   5
CD036316|CD036316.1 mgmt015xC16f.b Mated culture Magnaporthe grisea cDNA clone mgmt015xC16 5', mRNA sequence.    48   0.16   1
AC015216|AC015216.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    38   0.47   2
AC008532|AC008532.7 Homo sapiens chromosome 19 clone CTC-483I11, complete sequence.    46   0.64   1
AC094892|AC094892.5 Rattus norvegicus clone CH230-6B9, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.64   1
BZ935575|BZ935575.1 CH240_85G6.TJ CHORI-240 Bos taurus genomic clone CH240_85G6, genomic survey sequence.    46   0.64   1
AC126102|AC126102.3 Rattus norvegicus clone CH230-337F7, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.64   1
AC111998|AC111998.4 Rattus norvegicus clone CH230-54H8, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.64   1
AC012373|AC012373.14 Drosophila melanogaster, chromosome X, region 17B-17C, BAC clone BACR17H16, complete sequence.    38   0.89   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GW3) RecName: Full=Coiled-coil domain-containing protein 124...   138   1e-31

 psg: 0.61  gvh: 0.16  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHA810 is nuc

>CHA810F.Seq
AAATACATATAAATATTTATACAAACACATAAAACATATAAAAAAAAATGGGTGGTAAAA
AATTTGGTACCAATTCAAAAGCAGAAGAAGCTCGTTCAAAGAAAGCAGAAGTTAAAAAGA
ATGAAAATGAAAAGAAACAAAGAGATAAAGAGGATAAAATGNGGGAAGAAACAGATNCAA
AAATTTTAGATAAACAAAAAAAACAAAAAGAAAAAGAGGAAAAAGCAAGAGAAGATGCAA
AAAAGAAACAAGAAGCAAAAGAATTATTACAACAAGAAGATAAAGAAATTAAAGAAAGAT
ATGGTAAACCATCAGATACTAAAGTAACTCGTTTTGAAATTCAACAAAAGAGAGATAAAG
AACAAAAACAAAGAGAAAAAGAACTTGCTTCAAGACCATCCGATCCAAGAGTTGTTGTAG
TTCCAACAACAACAACAACAACAACAACTACAACTACAACTACCACTGGATCTGATGATC
ATGAAGAANAAGATTTTAACCTTGAAGAGAATATGAATCATATTTTACGTGAACAAAGAT
TGAAAGATGGTAAAGATGTTATTGATGCTAGAGATATTAATGAAGCNNNNNNNNNN