>CHA733 (CHA733Q) /CSM/CH/CHA7-B/CHA733Q.Seq.d/
XXXXXXXXXXTCTGCAACTACNGCAGGTACANCAACTGGTGGAACTACAACTGGTGGTTC
AANTTATGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATC
AAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCNCCGCTTGGNAGTA
GTGCTCCNTCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCAT

---LQLXQVXQLVELQLVVQXMIVVLLPQPIVALPPHHHQAVLLQVPLQVNHQVAPLGSS
APSSASSSAPSSASSSAP

Frame A:
---LQLXQVXQLVELQLVVQXMIVVLLPQPIVALPPHHHQAVLLQVPLQVNHQVAPLGSS
APSSASSSAPSSASSSAP


Frame B:
---cnyxryxnwwnynwwfxl***ccflsr**rcllitikqccfkcrfk*tik*xrlxvv
lxpllqvalhplpqvvlh


Frame C:
---attagtxtggtttggsxydssaassadssaassspsssaassaassepsssxawx*c
sxlcfk*rsilclk*cs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA733 (CHA733Q) /CSM/CH/CHA7-B/CHA733Q.Seq.d/                        414   e-115
SFK646 (SFK646Q) /CSM/SF/SFK6-B/SFK646Q.Seq.d/                        389   e-107
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        383   e-106
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        383   e-106
VFB558 (VFB558Q) /CSM/VF/VFB5-C/VFB558Q.Seq.d/                        383   e-106
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        383   e-106
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/                        383   e-106
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        383   e-106
SSI632 (SSI632Q) /CSM/SS/SSI6-B/SSI632Q.Seq.d/                        383   e-106
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        383   e-106

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   291   e-104  2
CD658158|CD658158.1 EtESTef18b08.y1 Eimeria tenella M5-6 Excised cDNA Eimeria tenella cDNA 5' similar to TR:O89068 O89068 RIBOSOMAL PROTEIN S3 ;, mRNA sequence.    34   0.56   2
D34686|D34686.1 C.elegans cDNA clone yk11a11 : 5' end, single read.    42   3.2    1
U23176|U23176.2 Caenorhabditis elegans cosmid F21H12, complete sequence.    42   3.2    1
CF644841|CF644841.1 K26_B01 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   5.1    2
AL935260|AL935260.1 Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11.    30   5.3    2
CF641582|CF641582.1 D41_E10 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   6.9    2
CF643189|CF643189.1 D60_G10 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   6.9    2
CF643884|CF643884.1 K13_G06 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   7.2    2
AP001598|AP001598.1 Homo sapiens genomic DNA, chromosome 21, clone:KB2043D3, APP-D21S292 region.    40   13     1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 118,725,641

 psg: 0.75  gvh: 0.68  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.16  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHA733 is nuc

>CHA733Z.Seq
NNNNNNNNNNTCTGCAACTACNGCAGGTACANCAACTGGTGGAACTACAACTGGTGGTTC
AANTTATGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATC
AAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCNCCGCTTGGNAGTA
GTGCTCCNTCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCAT