CHA721
Library CH
(Link to library)
Clone ID CHA721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHA721 (CHA721Q) /CSM/CH/CHA7-A/CHA721Q.Seq.d/
CTGTTGGCCTACTGGATTATTAAAATTTAAATAACAAACGAAAGTAAATAAAACATGTCC
GCAAGTAATAAAGATGACCAANTCATGAAAAATGAGTTCGAAAGTNCCTACGACAAAATT
GNAGATTCATTCGACAATATGGAGCTCCCAAAGGATCTNTTAAGAGGTATCTACTCCTAT
GGTTTTGAAAAGCCATCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTT
GATATTATTGCCCAAGCTCAATCTGGTACTGGTAAAACTGCTNCCTTCACCGTTGGXXXX
XXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
llaywiiki*itnesk*NMSASNKDDQXMKNEFESXYDKIXDSFDNMELPKDLLRGIYSY
GFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTAXFTV---


Translated Amino Acid sequence (All Frames)
Frame A:
llaywiiki*itnesk*NMSASNKDDQXMKNEFESXYDKIXDSFDNMELPKDLLRGIYSY
GFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTAXFTV---


Frame B:
cwptgllkfk*qtkvnktcpqvikmtxs*kmsskvpttklxihstiwssqrix*evstpm
vlkshqpsnkelsfhsqkvlillpklnlvlvkllpspl---


Frame C:
vglldy*nlnnkrk*ikhvrk**r*pxhek*vrkxlrqnxrfirqygapkgsxkrylllw
f*kaishptksyhstlkrf*yycpssiwyw*ncxlhr---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHA721 (CHA721Q) /CSM/CH/CHA7-A/CHA721Q.Seq.d/ 557 e-158
SFA766 (SFA766Q) /CSM/SF/SFA7-C/SFA766Q.Seq.d/ 513 e-145
SFG413 (SFG413Q) /CSM/SF/SFG4-A/SFG413Q.Seq.d/ 504 e-142
CHE485 (CHE485Q) /CSM/CH/CHE4-D/CHE485Q.Seq.d/ 504 e-142
CHA669 (CHA669Q) /CSM/CH/CHA6-C/CHA669Q.Seq.d/ 504 e-142
AFN611 (AFN611Q) /CSM/AF/AFN6-A/AFN611Q.Seq.d/ 498 e-140
SFH316 (SFH316Q) /CSM/SF/SFH3-A/SFH316Q.Seq.d/ 496 e-139
CFJ345 (CFJ345Q) /CSM/CF/CFJ3-B/CFJ345Q.Seq.d/ 496 e-139
CFF657 (CFF657Q) /CSM/CF/CFF6-C/CFF657Q.Seq.d/ 496 e-139
CFC566 (CFC566Q) /CSM/CF/CFC5-C/CFC566Q.Seq.d/ 496 e-139

own update 2003.10. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds. 444 e-121 1
CO540147|CO540147.1 tai16g09.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:IF41_HUMAN P04765 EUKARYOTIC INITIATION FACTOR 4A-I ;, mRNA sequence. 70 3e-15 2
CO539493|CO539493.1 tai17h01.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:IF41_HUMAN P04765 EUKARYOTIC INITIATION FACTOR 4A-I ;, mRNA sequence. 70 3e-15 2
CO539722|CO539722.1 tai21g02.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:IF41_HUMAN P04765 EUKARYOTIC INITIATION FACTOR 4A-I ;, mRNA sequence. 70 3e-15 2
CO720144|CO720144.1 tai39d07.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:IF41_HUMAN P04765 EUKARYOTIC INITIATION FACTOR 4A-I ;, mRNA sequence. 70 3e-15 2
CO535373|CO535373.1 tai01f06.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:IF41_HUMAN P04765 EUKARYOTIC INITIATION FACTOR 4A-I ;, mRNA sequence. 70 3e-15 2
CF657246|CF657246.1 tac73a04.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:IF42_MOUSE P10630 EUKARYOTIC INITIATION FACTOR 4A-II ;, mRNA sequence. 70 2e-12 2
CF778122|CF778122.1 tad20h12.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:IF42_HUMAN Q14240 EUKARYOTIC INITIATION FACTOR 4A-II ;, mRNA sequence. 70 2e-12 2
CF653779|CF653779.1 tac76c03.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:IF42_HUMAN Q14240 EUKARYOTIC INITIATION FACTOR 4A-II ;, mRNA sequence. 70 2e-12 2
CB936116|CB936116.1 taa33h02.y2 Hydra EST -III Hydra magnipapillata cDNA 5' similar to SW:IF42_MOUSE P10630 EUKARYOTIC INITIATION FACTOR 4A-II ;, mRNA sequence. 70 2e-12 2
dna update 2004. 9.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m... 154 1e-36
(A1D7N3) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 103 1e-21
(Q1DQ20) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 101 9e-21
(Q4WX43) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 101 9e-21
AM920435_674(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 100 1e-20
(A7EGL7) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 100 2e-20
(A6RJ45) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 100 2e-20
(A4QVP2) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 99 3e-20
CU633901_170(CU633901|pid:none) Podospora anserina genomic DNA c... 99 3e-20
BC049427_1(BC049427|pid:none) Danio rerio eukaryotic translation... 99 3e-20
protein update 2009. 3.29
PSORT

psg: 0.75 gvh: 0.28 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHA721 is nuc

5' end seq. ID CHA721F
5' end seq.
>CHA721F.Seq
CTGTTGGCCTACTGGATTATTAAAATTTAAATAACAAACGAAAGTAAATAAAACATGTCC
GCAAGTAATAAAGATGACCAANTCATGAAAAATGAGTTCGAAAGTNCCTACGACAAAATT
GNAGATTCATTCGACAATATGGAGCTCCCAAAGGATCTNTTAAGAGGTATCTACTCCTAT
GGTTTTGAAAAGCCATCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTT
GATATTATTGCCCAAGCTCAATCTGGTACTGGTAAAACTGCTNCCTTCACCGTTGGNNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -