>CHA652 (CHA652Q) /CSM/CH/CHA6-C/CHA652Q.Seq.d/
ATTTTATATCNCTAGATCAAAAAACAAATCAAAAACTCTAACTACATCAAAAAAATAAAA
AAAATATACAATGAGCACAACAAATACAGATATGATCGATTCATCAAGCGATATTAAAGA
TGAAACCATAACTCATAACAATGACACTGTAGATACAACCAAGGCAACAGAGATTACAGC
AGACAAAAATTTAGAAGTTTCAATAGATAAAAATAAAGAAAACAAAAATACAGCAGATGA
TAATAAAGAAAAAGAAAAAAAAAAXXXXXXXXXX

fyixrsknksktlttskk*KKYTMSTTNTDMIDSSSDIKDETITHNNDTVDTTKATEITA
DKNLEVSIDKNKENKNTADDNKEKEKK---

Frame A:
ilyx*ikkqiknsnyikkikkiynehnkyrydrfikry*r*nhns*q*hcrynqgnrdys
rqkfrsfnr*k*rkqkysr***rkrkk---


Frame B:
fyixrsknksktlttskk*KKYTMSTTNTDMIDSSSDIKDETITHNNDTVDTTKATEITA
DKNLEVSIDKNKENKNTADDNKEKEKK---


Frame C:
fisldqktnqkl*lhqknkkniq*aqqiqi*sihqailkmkp*litmtl*iqprqqrlqq
tki*kfq*ikikktkiqqmiikkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE469 (SLE469Q) /CSM/SL/SLE4-C/SLE469Q.Seq.d/                        270   1e-71
SLD649 (SLD649Q) /CSM/SL/SLD6-C/SLD649Q.Seq.d/                        270   1e-71
SFK807 (SFK807Q) /CSM/SF/SFK8-A/SFK807Q.Seq.d/                        270   1e-71
SFH891 (SFH891Q) /CSM/SF/SFH8-D/SFH891Q.Seq.d/                        270   1e-71
SFF243 (SFF243Q) /CSM/SF/SFF2-B/SFF243Q.Seq.d/                        270   1e-71
SFE382 (SFE382Q) /CSM/SF/SFE3-D/SFE382Q.Seq.d/                        270   1e-71
FC-AH17 (FC-AH17Q) /CSM/FC/FC-AH/FC-AH17Q.Seq.d/                      270   1e-71
CHA652 (CHA652Q) /CSM/CH/CHA6-C/CHA652Q.Seq.d/                        270   1e-71
CFA186 (CFA186Q) /CSM/CF/CFA1-D/CFA186Q.Seq.d/                        270   1e-71
AFM671 (AFM671Q) /CSM/AF/AFM6-C/AFM671Q.Seq.d/                        270   1e-71

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC103802|AC103802.1 Homo sapiens chromosome 11 clone RP11-964H21 map 11, LOW-PASS SEQUENCE SAMPLING.    44   1.1    1
BG941148|BG941148.1 ax09f02.y1 Proliferating Human Erythroid Cells (LCB:ax library) Homo sapiens cDNA clone ax09f02 random, mRNA sequence.    44   1.1    1
AC129913|AC129913.2 Homo sapiens chromosome 11, clone CTD-2382G9, complete sequence.    44   1.1    1
BU248774|BU248774.1 603551568F1 CSEQCHN34 Gallus gallus cDNA clone ChEST522g17 5', mRNA sequence.    44   1.1    1
AC090832|AC090832.5 Homo sapiens chromosome 11, clone CTD-2353H9, complete sequence.    44   1.1    1
BX640406|BX640406.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   5.5    4
AC098728|AC098728.3 Mus musculus clone RP23-3H22, complete sequence.    40   17     1
CR165215|CR165215.1 Forward strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN200d14.    40   17     1
AU206941|AU206941.2 Caenorhabditis elegans cDNA clone:yk883e10 : 5' end, single read.    40   17     1
U97408|U97408.1 Caenorhabditis elegans cosmid F48A9, complete sequence.    40   17     1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 113,452,758

 psg: 0.68  gvh: 0.26  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for CHA652 is nuc

>CHA652F.Seq
ATTTTATATCNCTAGATCAAAAAACAAATCAAAAACTCTAACTACATCAAAAAAATAAAA
AAAATATACAATGAGCACAACAAATACAGATATGATCGATTCATCAAGCGATATTAAAGA
TGAAACCATAACTCATAACAATGACACTGTAGATACAACCAAGGCAACAGAGATTACAGC
AGACAAAAATTTAGAAGTTTCAATAGATAAAAATAAAGAAAACAAAAATACAGCAGATGA
TAATAAAGAAAAAGAAAAAAAAAANNNNNNNNNN