>CHA579 (CHA579Q) /CSM/CH/CHA5-D/CHA579Q.Seq.d/
AATGCAATTTATTTGTTTTTTTCCAGTGAAAAAAAAATCTAAAAATAAAATTTCAGTGAA
AAAAAAAAAAAATTAAAAAAATTAAAATTTTAAAAANNAAAXXXXXXXXXXACCAANATG
AATTNTNTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTNACG
ATGAAATCGTTCCAGTCACCGTAAAGACCNAGGATGGCAAAACCATNGTCGTCGATAAAG
ACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCA
AAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTT
GTTTAGTTATGAAAAGAAG

cnlfvffq*kknlkikfq*KKKKIKKIKILKXK---

---QXEXXVNSHKKAGAAQKAGKFXDEIVPVTVKTXDGKTXVVDKDEGIREKTTVADLAK
LKPAFKEGGTTTAGNSSQMSDGAAACLVMKR

Frame A:
naiylffssekki*k*nfsekkkklkklkf*kx---

---txmnxx*ihtrrqvppkkqvnxtmksfqsp*rprmakpxssiktkvsvrkpplqiwp
n*nqlskrvvqpplvtlvk*vmvpplv*l*ke

Frame B:
mqficffpvkkksknkisvkkkkn*kn*nfkxx---

---px*ixckftqegrcrpksr*ixr*nrsshrkdxgwqnhxrr*rrryp*enhrcrfgq
iktsfqrgwynhrw*l*sne*wcrrlfsyekk

Frame C:
cnlfvffq*kknlkikfq*KKKKIKKIKILKXK---

---QXEXXVNSHKKAGAAQKAGKFXDEIVPVTVKTXDGKTXVVDKDEGIREKTTVADLAK
LKPAFKEGGTTTAGNSSQMSDGAAACLVMKR

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                        496   e-139
VFN350 (VFN350Q) /CSM/VF/VFN3-C/VFN350Q.Seq.d/                        496   e-139
VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/                        496   e-139
VFM869 (VFM869Q) /CSM/VF/VFM8-C/VFM869Q.Seq.d/                        496   e-139
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/                        496   e-139
VFL724 (VFL724Q) /CSM/VF/VFL7-A/VFL724Q.Seq.d/                        496   e-139
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/                        496   e-139
VFJ317 (VFJ317Q) /CSM/VF/VFJ3-A/VFJ317Q.Seq.d/                        496   e-139
VFG270 (VFG270Q) /CSM/VF/VFG2-C/VFG270Q.Seq.d/                        496   e-139
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                        496   e-139

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   496   e-136  1
CB823773|CB823773.1 EST 4997 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh001l03 3', mRNA sequence.    52   0.006  1
CV052777|CV052777.1 EST 12225 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bge017e02q 5', mRNA sequence.    52   0.006  1
CB821170|CB821170.1 EST 2021 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be001h20 3', mRNA sequence.    52   0.006  1
AJ504889|AJ504889.1 Pyrus communis EST, clone L696.                52   0.006  1
CV049464|CV049464.1 EST 14781 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bgh001l03q 5', mRNA sequence.    52   0.006  1
CO069166|CO069166.1 Mdfw2060h11.y1 Mdfw Malus x domestica cDNA clone Mdfw2060h11 5' similar to TR:Q42918 Q42918 ACETYL-COA C-ACYLTRANSFERASE ;, mRNA sequence.    52   0.006  1
CB086716|CB086716.1 hj89c06.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hj89c06, mRNA sequence.    50   0.026  1
BU043554|BU043554.1 PP_LEa0016G22f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0016G22f, mRNA sequence.    48   0.10   1
AE017280|AE017280.1 Bacillus cereus ATCC 10987, section 17 of 18 of the complete genome.    40   1.4    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   103   2e-21
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...    71   1e-11
AC126019_22(AC126019|pid:none) Medicago truncatula clone mth2-22...    70   3e-11
AK222103_1(AK222103|pid:none) Arabidopsis thaliana mRNA for 3-ke...    69   4e-11
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.        69   4e-11
AY085052_1(AY085052|pid:none) Arabidopsis thaliana clone 125847 ...    69   4e-11
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...    69   4e-11
(Q8LF48) RecName: Full=3-ketoacyl-CoA thiolase 1, peroxisomal;  ...    69   4e-11
AY383736_1(AY383736|pid:none) Glycine max 3-ketoacyl-CoA thiolas...    69   6e-11
AP008230_3368(AP008230|pid:none) Desulfitobacterium hafniense Y5...    68   8e-11

 psg: 0.51  gvh: 0.34  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial

>> prediction for CHA579 is cyt

>CHA579F.Seq
AATGCAATTTATTTGTTTTTTTCCAGTGAAAAAAAAATCTAAAAATAAAATTTCAGTGAA
AAAAAAAAAAAATTAAAAAAATTAAAATTTTAAAAANNAAANNNNNNNNNN

>CHA579Z.Seq
NNNNNNNNNNACCAANATGAATTNTNTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAA
AAAGCAGGTAAATTTNACGATGAAATCGTTCCAGTCACCGTAAAGACCNAGGATGGCAAA
ACCATNGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCC
AAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATG
AGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAG

>CHA579P.Seq
AATGCAATTTATTTGTTTTTTTCCAGTGAAAAAAAAATCTAAAAATAAAATTTCAGTGAA
AAAAAAAAAAAATTAAAAAAATTAAAATTTTAAAAANNAAA----------ACCAANATG
AATTNTNTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTNACG
ATGAAATCGTTCCAGTCACCGTAAAGACCNAGGATGGCAAAACCATNGTCGTCGATAAAG
ACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCA
AAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTT
GTTTAGTTATGAAAAGAAG