>CHA575 (CHA575Q) /CSM/CH/CHA5-D/CHA575Q.Seq.d/
GAATAAAATTTTAACTCGTAGTTTTAGTACTGGTGCAAATTTCTTTGCCTCTGGTAAAGG
TAAAGCACCAGTTAGAGTTGCCATTACTGGTGCCAGTGGTCAAATTGGTTATCAATTATT
ATTCAGAATTGCCAGTGGTGATATGTTAGGTAAAGATCAACCAATCATTCTCCAATGTTT
AGAATTACCAGGTGCAATGAACTCATTAAAAGGTGTTTCAATGGAATTGGATGATTGTGC
ATTCCCATTGCTCAAAGGTATTGTTCAAAGTGATAAACCAGAGGAAGCATTCGCTGGTGC
AGACTATGCATTATTAGTTGGTGCTCGTCCAAGAAGCAAGGGTATGGAGCGTGGTGACCT
TTTAAAAGCAAATGCTGAAATTTTCTCTGTTCAAGGTAAAGCATTAGACAAAAGTGCTAA
TCGTGACACTTTAAGAGTTTTAGTTGTAGGTAACCCAGCCAATACCAACGCATTAATTGC
CGCCCGTAATGCACCAAATATXXXXXXXXXX

NKILTRSFSTGANFFASGKGKAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCL
ELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDL
LKANAEIFSVQGKALDKSANRDTLRVLVVGNPANTNALIAARNAPN---

Frame A:
e*nfns*f*ywckflclw*r*sts*schywcqwsnwlsiiiqncqw*yvr*rstnhspmf
ritrcnelikrcfngig*lcipiaqrycsk**trgsirwcrlciiswcsskkqgygaw*p
fkskc*nflcsr*sirqkc*s*hfksfscr*psqyqrincrp*ctk---


Frame B:
NKILTRSFSTGANFFASGKGKAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCL
ELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDL
LKANAEIFSVQGKALDKSANRDTLRVLVVGNPANTNALIAARNAPN---


Frame C:
ikf*lvvlvlvqislplvkvkhqlelpllvpvvklvinyyselpvvic*vkinqsfsnv*
nyqvq*th*kvfqwnwmivhshcskvlfkvinqrkhslvqtmhy*lvlvqearvwsvvtf
*kqmlkfslfkvkh*tkvlivtl*ef*l*vtqpipth*lppvmhqi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD532 (VSD532Q) /CSM/VS/VSD5-B/VSD532Q.Seq.d/                        993   0.0
VHN148 (VHN148Q) /CSM/VH/VHN1-B/VHN148Q.Seq.d/                        993   0.0
VFK569 (VFK569Q) /CSM/VF/VFK5-C/VFK569Q.Seq.d/                        993   0.0
VFI317 (VFI317Q) /CSM/VF/VFI3-A/VFI317Q.Seq.d/                        993   0.0
VFH801 (VFH801Q) /CSM/VF/VFH8-A/VFH801Q.Seq.d/                        993   0.0
VFF865 (VFF865Q) /CSM/VF/VFF8-C/VFF865Q.Seq.d/                        993   0.0
VFF391 (VFF391Q) /CSM/VF/VFF3-D/VFF391Q.Seq.d/                        993   0.0
VFD443 (VFD443Q) /CSM/VF/VFD4-B/VFD443Q.Seq.d/                        993   0.0
VFC762 (VFC762Q) /CSM/VF/VFC7-C/VFC762Q.Seq.d/                        993   0.0
VFB446 (VFB446Q) /CSM/VF/VFB4-B/VFB446Q.Seq.d/                        993   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR317645|AR317645.1 Sequence 195 from patent US 6562958.           38   6e-04  3
CB408082|CB408082.1 IPG013F11_249066 JH III-treated male I. pini midguts Ips pini cDNA clone IPG013F11 5, mRNA sequence.    38   0.20   2
AX685430|AX685430.1 Sequence 43 from Patent WO02090383.            34   0.33   3
AP001349|AP001349.2 Homo sapiens genomic DNA, chromosome 11q12 clone:CMB9-37F1, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40   0.53   4
CN805172|CN805172.1 ILLUMIGEN_MCQ_36106 Katze_MMBR Macaca mulatta cDNA clone IBIUW:11567 5' similar to Bases 258 to 437 highly similar to human MDH1 (Hs.75375), mRNA sequence.    46   0.55   1
CN644175|CN644175.1 ILLUMIGEN_MCQ_9778 Katze_MMBR Macaca mulatta cDNA clone IBIUW:8982 5' similar to Bases 1 to 964 highly similar to human MDH1 (Hs.75375), mRNA sequence.    46   0.55   1
CD766800|CD766800.1 AGENCOURT_14708832 NICHD_Rh_Test1 Macaca mulatta cDNA clone IMAGE:6972656 5', mRNA sequence.    46   0.55   1
CN802145|CN802145.1 ILLUMIGEN_MCQ_37720 Katze_MMBR Macaca mulatta cDNA clone IBIUW:14832 5' similar to Bases 216 to 395 highly similar to human MDH1 (Hs.75375), mRNA sequence.    46   0.55   1
CN801831|CN801831.1 ILLUMIGEN_MCQ_37115 Katze_MMBR Macaca mulatta cDNA clone IBIUW:14995 5' similar to Bases 216 to 395 highly similar to human MDH1 (Hs.75375), mRNA sequence.    46   0.55   1
CN647255|CN647255.1 ILLUMIGEN_MCQ_28087 Katze_MMBR Macaca mulatta cDNA clone IBIUW:7775 5' similar to Bases 1 to 963 highly similar to human MDH1 (Hs.75375), mRNA sequence.    46   0.55   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D04) RecName: Full=Probable malate dehydrogenase 2, mitochon...   324   6e-88
(Q0ABE6) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   211   8e-54
(Q1LKG0) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   210   1e-53
(Q0K8F5) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   209   3e-53
CU633749_2079(CU633749|pid:none) Cupriavidus taiwanensis str. LM...   209   3e-53
(Q46YU4) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   206   2e-52
CP000934_1926(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...   204   1e-51
CP001053_2776(CP001053|pid:none) Burkholderia phytofirmans PsJN ...   203   2e-51
(A5WGM2) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   202   4e-51
(Q13S42) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   200   1e-50

 psg: 0.87  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHA575 is mit

>CHA575F.Seq
GAATAAAATTTTAACTCGTAGTTTTAGTACTGGTGCAAATTTCTTTGCCTCTGGTAAAGG
TAAAGCACCAGTTAGAGTTGCCATTACTGGTGCCAGTGGTCAAATTGGTTATCAATTATT
ATTCAGAATTGCCAGTGGTGATATGTTAGGTAAAGATCAACCAATCATTCTCCAATGTTT
AGAATTACCAGGTGCAATGAACTCATTAAAAGGTGTTTCAATGGAATTGGATGATTGTGC
ATTCCCATTGCTCAAAGGTATTGTTCAAAGTGATAAACCAGAGGAAGCATTCGCTGGTGC
AGACTATGCATTATTAGTTGGTGCTCGTCCAAGAAGCAAGGGTATGGAGCGTGGTGACCT
TTTAAAAGCAAATGCTGAAATTTTCTCTGTTCAAGGTAAAGCATTAGACAAAAGTGCTAA
TCGTGACACTTTAAGAGTTTTAGTTGTAGGTAACCCAGCCAATACCAACGCATTAATTGC
CGCCCGTAATGCACCAAATATNNNNNNNNNN