>CHA557 (CHA557Q) /CSM/CH/CHA5-C/CHA557Q.Seq.d/
CACAAAATTTTTTTTAAAATTGAAATAATATAATAAATAAAAAAATGATGAAAGCCAATA
AAATTATAAAATTATTTAAAGGTACAGTTATACATTCAATAGAGATTGGTAAAGTTGAAA
TTTTACCAAATTCATTAATTGGTATTGATGAAGATGGTGTAATTCAACATATGAAATCAA
ATTATGAAGATTTGAAACAATTAGAAAAGGATGTAACAATGATTTGTACAGATAATGGTA
TTAATGAGCAAGAATCAGTGATTGATATGGGTAATAAATTTTTAATTCCAGGTTTTATTG
ATACACATGCTCATGCACCACAATATCATAATGCAGGCACAGGTACAGATTTACCATTAT
TAAAATGGTTAGAGAAATACACATTCCCAGTAGAGAGTAAATTCAAGGATTTAATATTTG
CGGAGAATGTTTATGGTAAAGTTGTAGACCGTATGTTACGTCATGGTACCACTACCTGTT
GTTATTATGCAACCATTCATTTGGAGGCAAGTGAACTATTGGCAGAGATTGTATCAAAAC
GTGGTCAACGTGCATTCATTGGTAAAGTTTGTATGGATCGTCATTCACCAGATCATTACG
TTGAGACTACXXXXXXXXXX

qnff*n*NNIINKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGIDEDGVIQHMKSN
YEDLKQLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQYHNAGTGTDLPLL
KWLEKYTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLEASELLAEIVSKR
GQRAFIGKVCMDRHSPDHYVET---

Frame A:
hkiffkieii**ikk**kpikl*nylkvqlyiq*rlvklkfyqih*lvlmkmv*fni*nq
imki*nn*krm*q*fvqimvlmsknq*liwvinf*fqvllihmlmhhniimqaqvqiyhy
*ng*rnthsq*rvnsri*ylrrmfmvkl*tvcyvmvplpvvimqpfiwrqvnywqrlyqn
vvnvhslvkfvwivihqiitlrl---


Frame B:
tkfflklk*ynk*kndesq*nykii*rysytfnrdw*s*nftkfinwy**rwcnstyeik
l*rfetirkgcnndlyr*wy**arisd*yg**ifnsrfy*ytcscttis*crhryrftii
kmvreihipsre*iqgfnicgeclw*scrpyvtswyhyllllcnhsfggk*tigrdcikt
wstcihw*slygssftrslr*d---


Frame C:
qnff*n*NNIINKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGIDEDGVIQHMKSN
YEDLKQLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQYHNAGTGTDLPLL
KWLEKYTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLEASELLAEIVSKR
GQRAFIGKVCMDRHSPDHYVET---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO805 (VFO805Q) /CSM/VF/VFO8-A/VFO805Q.Seq.d/                       1120   0.0
VFI612 (VFI612Q) /CSM/VF/VFI6-A/VFI612Q.Seq.d/                       1120   0.0
VFF683 (VFF683Q) /CSM/VF/VFF6-D/VFF683Q.Seq.d/                       1120   0.0
SSI524 (SSI524Q) /CSM/SS/SSI5-A/SSI524Q.Seq.d/                       1120   0.0
SFB492 (SFB492Q) /CSM/SF/SFB4-D/SFB492Q.Seq.d/                       1120   0.0
CHA557 (CHA557Q) /CSM/CH/CHA5-C/CHA557Q.Seq.d/                       1120   0.0
CFD785 (CFD785Q) /CSM/CF/CFD7-D/CFD785Q.Seq.d/                       1120   0.0
AFD208 (AFD208Q) /CSM/AF/AFD2-A/AFD208Q.Seq.d/                       1120   0.0
CFH724 (CFH724Q) /CSM/CF/CFH7-A/CFH724Q.Seq.d/                       1112   0.0
FC-BN10 (FC-BN10Q) /CSM/FC/FC-BN/FC-BN10Q.Seq.d/                     1086   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1094   0.0    1
AL440837|AL440837.1 T3 end of clone BD0AA015B05 of library BD0AA from strain CBS 94 of  Candida tropicalis.    40   0.002  2
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome.    32   0.003  12
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   0.006  10
AC032016|AC032016.3 Homo sapiens chromosome 17 clone RP11-254P14 map 17, WORKING DRAFT SEQUENCE, 2 ordered pieces.    32   0.008  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.009  12
AP003364|AP003364.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 7/9.    32   0.009  10
AC063935|AC063935.12 Homo sapiens chromosome 3 clone CTC-316G23, WORKING DRAFT SEQUENCE, 34 unordered pieces.    38   0.016  7
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    36   0.020  8
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   0.020  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY924419_1(AY924419|pid:none) Trimastix pyriformis ATCC50562 gua...   159   7e-38
AF369885_1(AF369885|pid:none) Mus spretus guanine deaminase (Gda...   155   8e-37
AF144745_1(AF144745|pid:none) Homo sapiens guanine aminohydrolas...   155   1e-36
AB033084_1(AB033084|pid:none) Homo sapiens mRNA for KIAA1258 pro...   155   1e-36
(Q9Y2T3) RecName: Full=Guanine deaminase;          Short=Guanase...   155   1e-36
AK157014_1(AK157014|pid:none) Mus musculus activated spleen cDNA...   154   1e-36
AF245172_1(AF245172|pid:none) Rattus norvegicus guanine deaminas...   154   1e-36
(Q5RAV9) RecName: Full=Guanine deaminase;          Short=Guanase...   151   1e-35
AY926576_1(AY926576|pid:none) Malawimonas californiana guanine d...   149   5e-35
BC082390_1(BC082390|pid:none) Xenopus laevis hypothetical protei...   149   8e-35

 psg: 0.67  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHA557 is nuc

>CHA557F.Seq
CACAAAATTTTTTTTAAAATTGAAATAATATAATAAATAAAAAAATGATGAAAGCCAATA
AAATTATAAAATTATTTAAAGGTACAGTTATACATTCAATAGAGATTGGTAAAGTTGAAA
TTTTACCAAATTCATTAATTGGTATTGATGAAGATGGTGTAATTCAACATATGAAATCAA
ATTATGAAGATTTGAAACAATTAGAAAAGGATGTAACAATGATTTGTACAGATAATGGTA
TTAATGAGCAAGAATCAGTGATTGATATGGGTAATAAATTTTTAATTCCAGGTTTTATTG
ATACACATGCTCATGCACCACAATATCATAATGCAGGCACAGGTACAGATTTACCATTAT
TAAAATGGTTAGAGAAATACACATTCCCAGTAGAGAGTAAATTCAAGGATTTAATATTTG
CGGAGAATGTTTATGGTAAAGTTGTAGACCGTATGTTACGTCATGGTACCACTACCTGTT
GTTATTATGCAACCATTCATTTGGAGGCAAGTGAACTATTGGCAGAGATTGTATCAAAAC
GTGGTCAACGTGCATTCATTGGTAAAGTTTGTATGGATCGTCATTCACCAGATCATTACG
TTGAGACTACNNNNNNNNNN